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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 224/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
SMAP1.1.7Robin AnderssonLast Changed Date: 2007-08-20 08:21:46 -0700 Last Changed Rev: 26522 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ OK ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: SMAP |
Version: 1.1.7 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check SMAP_1.1.7.tar.gz |
RetCode: 0 |
Time: 80.1 seconds |
Status: OK |
CheckDir: SMAP.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/SMAP.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'SMAP/DESCRIPTION' ... OK * this is package 'SMAP' version '1.1.7' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'SMAP' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating SMAP-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating SMAP-manual.tex ... OK * checking SMAP-manual.tex ... OK
SMAP.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/SMAP.Rcheck ---------- Making package SMAP ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making gradient.d from gradient.c making init.d from init.c making overlap.d from overlap.c making prob.d from prob.c making viterbi.d from viterbi.c gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c gradient.c -o gradient.o gradient.c: In function `hmm_update': gradient.c:247: warning: unused variable `tmp' gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c init.c -o init.o gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c overlap.c -o overlap.o gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c prob.c -o prob.o gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c viterbi.c -o viterbi.o windres -I e:/biocbld/bbs-2.1-bioc/R/include -i SMAP_res.rc -o SMAP_res.o gcc -shared -s -o SMAP.dll SMAP.def gradient.o init.o overlap.o prob.o viterbi.o SMAP_res.o -Le:/biocbld/bbs-2.1-bioc/R/bin -lR ... DLL made installing DLL installing R files installing inst files installing data files preparing package SMAP for lazy loading Creating a new generic function for "plot" in "SMAP" installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'SMAP' Formats: text html latex example chm GBM text html latex example chm SMAP-internal text html latex chm SMAPHMM-class text html latex chm SMAPHMM text html latex chm SMAPObservations-class text html latex chm SMAPObservations text html latex example chm SMAPProfile-class text html latex chm SMAPProfiles-class text html latex chm smap text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\SMAP.Rcheck\00_pkg_src\SMAP\chm\SMAP.chm Compile time: 0 minutes, 0 seconds 10 Topics 66 Local links 0 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\SMAP.Rcheck\00_pkg_src\SMAP\chm\SMAP.chm, 28,889 bytes Compression decreased file by 23,567 bytes. adding MD5 sums * DONE (SMAP)