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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 211/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
SAGElyzer1.15.0Jianhua ZhangLast Changed Date: 2007-08-01 13:23:31 -0700 Last Changed Rev: 26107 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ ERROR ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | ERROR | OK |
Package: SAGElyzer |
Version: 1.15.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check SAGElyzer_1.15.0.tar.gz |
RetCode: 1 |
Time: 29.8 seconds |
Status: ERROR |
CheckDir: SAGElyzer.Rcheck |
Warnings: NA |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/SAGElyzer.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'SAGElyzer/DESCRIPTION' ... OK * this is package 'SAGElyzer' version '1.15.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'SAGElyzer' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... ERROR Loading required package: AnnBuilder Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: XML Loading required package: annotate Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: tkWidgets Loading required package: widgetTools Loading required package: tcltk Loading Tcl/Tk interface ... done Loading required package: DynDoc Loading required package: genefilter Loading required package: survival Loading required package: splines Loading required package: RODBC Error in fun(...) : package RODBC unavailable In addition: Warning message: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called 'RODBC' Error : .onLoad failed in 'loadNamespace' for 'SAGElyzer' Error: package/namespace load failed for 'SAGElyzer' Execution halted It looks like this package has a loading problem: see the messages for details.
SAGElyzer.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/SAGElyzer.Rcheck ---------- Making package SAGElyzer ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata installing R files installing exec files installing inst files installing data files installing man source files installing indices not zipping data installing help Note: unmatched right brace in 'SAGEMapper' on or after line 11 Note: unmatched right brace in 'SAGEMapper.Rd' on or after line 11 >>> Building/Updating help pages for package 'SAGElyzer' Formats: text html latex example chm SAGELyzer text html latex example chm SAGEMapper text html latex example chm SAGEToolTips text html latex example chm SAGEWidget text html latex example chm con4Win text html latex example chm getGEOSAGE text html latex example chm getNormFactor text html latex example chm getTargetRow text html latex example chm mergeSAGE text html latex example chm mergeSAGEWidget text html latex example chm querySAGE text html latex example chm support text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\SAGElyzer.Rcheck\00_pkg_src\SAGElyzer\chm\SAGElyzer.chm Compile time: 0 minutes, 0 seconds 13 Topics 144 Local links 5 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\SAGElyzer.Rcheck\00_pkg_src\SAGElyzer\chm\SAGElyzer.chm, 38,292 bytes Compression decreased file by 35,550 bytes. preparing package SAGElyzer for lazy loading Loading required package: AnnBuilder Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: XML Loading required package: annotate Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: tkWidgets Loading required package: widgetTools Loading required package: tcltk Loading Tcl/Tk interface ... done Loading required package: DynDoc Loading required package: genefilter Loading required package: survival Loading required package: splines adding MD5 sums * DONE (SAGElyzer)