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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 200/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
Rintact0.3.29Tony ChiangLast Changed Date: 2007-08-09 18:48:41 -0700 Last Changed Rev: 26290 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ WARNINGS ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: Rintact |
Version: 0.3.29 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check Rintact_0.3.29.tar.gz |
RetCode: 0 |
Time: 156.6 seconds |
Status: WARNINGS |
CheckDir: Rintact.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/Rintact.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'Rintact/DESCRIPTION' ... OK * this is package 'Rintact' version '0.3.29' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'Rintact' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE eListHandler : startElement: no visible binding for '<<-' assignment to 'curEL' eListHandler : startElement: no visible binding for global variable 'curEL' eListHandler : text: no visible binding for global variable 'curEL' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: bait complexes interactions interactors prey Undocumented S4 methods: generic 'bait' and siglist 'intactInteraction' generic 'complexes' and siglist 'complexEntry' generic 'interactions' and siglist 'interactionEntry' generic 'interactors' and siglist 'interactionEntry' generic 'interactors' and siglist 'complexEntry' generic 'prey' and siglist 'intactInteraction' All user-level objects in a package (including S4 classes and methods) should have documentation entries. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating Rintact-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating Rintact-manual.tex ... OK * checking Rintact-manual.tex ... OK WARNING: There was 1 warning, see E:/biocbld/bbs-2.1-bioc/meat/Rintact.Rcheck/00check.log for details
Rintact.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/Rintact.Rcheck ---------- Making package Rintact ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata installing R files installing inst files installing man source files installing indices installing help >>> Building/Updating help pages for package 'Rintact' Formats: text html latex example chm complexEntry text html latex chm eListHandler text html latex example chm intactComplex text html latex chm intactGraph text html latex chm intactHyperGraph text html latex chm intactInteraction text html latex chm intactXML2Graph text html latex example chm interactionEntry text html latex chm list2Matrix text html latex example chm psi25interaction text html latex example chm translateIntactID text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\Rintact.Rcheck\00_pkg_src\Rintact\chm\Rintact.chm Compile time: 0 minutes, 0 seconds 12 Topics 47 Local links 5 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\Rintact.Rcheck\00_pkg_src\Rintact\chm\Rintact.chm, 25,520 bytes Compression decreased file by 11,603 bytes. preparing package Rintact for lazy loading Loading required package: XML Loading required package: graph Loading required package: ppiStats Loading required package: GO Loading required package: GOstats Loading required package: GO.db Loading required package: AnnotationDbi Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: DBI Loading required package: RSQLite Attaching package: 'GO.db' The following object(s) are masked from package:GO : GOBPANCESTOR, GOBPCHILDREN, GOBPOFFSPRING, GOBPPARENTS, GOCCANCESTOR, GOCCCHILDREN, GOCCOFFSPRING, GOCCPARENTS, GOMAPCOUNTS, GOMFANCESTOR, GOMFCHILDREN, GOMFOFFSPRING, GOMFPARENTS, GOOBSOLETE, GOSYNONYM, GOTERM Loading required package: annotate Loading required package: RBGL Loading required package: Category Loading required package: genefilter Loading required package: survival Loading required package: splines Loading required package: YEAST Loading required package: ppiData Loading required package: Rgraphviz Attaching package: 'Rgraphviz' The following object(s) are masked from package:annotate : toFile Loading required package: hypergraph adding MD5 sums * DONE (Rintact)