Package: MLInterfaces

Version: 1.11.4

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check MLInterfaces_1.11.4.tar.gz

RetCode: 0

Time: 214.5 seconds

Status: OK

CheckDir: MLInterfaces.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/MLInterfaces.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-10 r42465)
* checking for file 'MLInterfaces/DESCRIPTION' ... OK
* this is package 'MLInterfaces' version '1.11.4'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MLInterfaces' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
makeCVFunc: multiple local function definitions for 'resfunc' with
  different formal arguments
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'MLIntInternals':
  predict.knnP print.knnP

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* creating MLInterfaces-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating MLInterfaces-manual.tex ... OK
* checking MLInterfaces-manual.tex ... OK

* Installing *source* package 'MLInterfaces' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: rpart
Loading required package: rda
** help
 >>> Building/Updating help pages for package 'MLInterfaces'
     Formats: text html latex example 
  MLIclust                          text    html    latex   example
  MLIntInternals                    text    html    latex   example
  MLearn-methods                    text    html    latex   example
  RAB                               text    html    latex   example
  SOMB                              text    html    latex   example
  classifOutput-class               text    html    latex   example
  clustOutput-class                 text    html    latex   example
  confuMat-methods                  text    html    latex   example
  knnB                              text    html    latex   example
  planarPlot-methods                text    html    latex   example
  raboostCont-class                 text    html    latex   example
  varImpStruct-class                text    html    latex   example
  xval-methods                      text    html    latex   example
  xvalLoop-methods                  text    html    latex
  xvalLoop                          text    html    latex   example
** building package indices ...
* DONE (MLInterfaces)