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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 107/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
Harshlight1.5.0Maurizio PellegrinoLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | [ WARNINGS ] | OK |
Package: Harshlight |
Version: 1.5.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check Harshlight_1.5.0.tar.gz |
RetCode: 0 |
Time: 47.1 seconds |
Status: WARNINGS |
CheckDir: Harshlight.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/Harshlight.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-10 r42465) * checking for file 'Harshlight/DESCRIPTION' ... OK * this is package 'Harshlight' version '1.5.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'Harshlight' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Harshlight: no visible binding for global variable 'sim' Harshlight: no visible binding for global variable 'sim.int' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Data sets with usage in documentation object 'sim' but not in code: sim_n4_534 sim_n4_640 sim_n4_712 sim_n8_534 sim_n8_640 sim_n8_712 sim_4_534 sim_4_640 sim_4_712 sim_8_534 sim_8_640 sim_8_712 * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating Harshlight-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating Harshlight-manual.tex ... OK * checking Harshlight-manual.tex ... OK WARNING: There was 1 warning, see /Users/biocbuild/bbs-2.1-bioc/meat/Harshlight.Rcheck/00check.log for details
Harshlight.Rcheck/00install.out:
* Installing *source* package 'Harshlight' ... ** libs ** arch - i386 gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -Wall -std=gnu99 -march=nocona -c Harshlight.c -o Harshlight.o gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Harshlight.so Harshlight.o -F/Library/Frameworks/R.framework/.. -framework R ** arch - ppc gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c Harshlight.c -o Harshlight.o gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Harshlight.so Harshlight.o -F/Library/Frameworks/R.framework/.. -framework R ** R ** data ** inst ** preparing package for lazy loading Loading required package: affy Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affyio Loading required package: preprocessCore ** help >>> Building/Updating help pages for package 'Harshlight' Formats: text html latex example HarshComp text html latex HarshExt text html latex Harshlight text html latex example sim text html latex ** building package indices ... * DONE (Harshlight)