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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 98/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
GlobalAncova3.3.1R. MeisterLast Changed Date: 2007-07-13 05:22:47 -0700 Last Changed Rev: 25796 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ WARNINGS ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: GlobalAncova |
Version: 3.3.1 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check GlobalAncova_3.3.1.tar.gz |
RetCode: 0 |
Time: 938.6 seconds |
Status: WARNINGS |
CheckDir: GlobalAncova.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/GlobalAncova.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'GlobalAncova/DESCRIPTION' ... OK * this is package 'GlobalAncova' version '3.3.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'GlobalAncova' can be installed ... WARNING Found the following significant warnings: Warning: Multiple methods lists found for 'combine' See '/extra/loc/biocbuild/bbs-2.1-bioc/meat/GlobalAncova.Rcheck/00install.out' for details. * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating GlobalAncova-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating GlobalAncova-manual.tex ... OK * checking GlobalAncova-manual.tex ... OK WARNING: There was 1 warning, see /extra/loc/biocbuild/bbs-2.1-bioc/meat/GlobalAncova.Rcheck/00check.log for details
GlobalAncova.Rcheck/00install.out:
* Installing *source* package 'GlobalAncova' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: corpcor Loading required package: globaltest Loading required package: multtest Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: survival Loading required package: splines Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: annotate Warning: Multiple methods lists found for 'combine' ** help >>> Building/Updating help pages for package 'GlobalAncova' Formats: text html latex example GAGO text html latex example GlobalAncova-methods text html latex GlobalAncova text html latex example GlobalAncova.closed-methods text html latex GlobalAncova.closed text html latex GlobalAncova.decomp text html latex example Plot.all text html latex example Plot.genes-methods text html latex Plot.genes text html latex example Plot.sequential text html latex example Plot.subjects-methods text html latex Plot.subjects text html latex example colon.normal text html latex example colon.pheno text html latex example colon.tumour text html latex example pair.compare text html latex example pathways text html latex example phenodata text html latex example vantVeer text html latex example ** building package indices ... * DONE (GlobalAncova)