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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 91/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
GeneticsPed1.1.0Gregor GorjancLast Changed Date: 2007-08-20 23:30:44 -0700 Last Changed Rev: 26548 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ OK ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: GeneticsPed |
Version: 1.1.0 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check GeneticsPed_1.1.0.tar.gz |
RetCode: 0 |
Time: 98.0 seconds |
Status: OK |
CheckDir: GeneticsPed.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/GeneticsPed.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'GeneticsPed/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'GeneticsPed' version '1.1.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'GeneticsPed' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE checkId: no visible global function definition for 'subjectNA' check.Pedigree: no visible global function definition for 'checkSex' check.Pedigree: no visible global function definition for 'checkDtBirth' codeUnit: no visible binding for global variable 'mapFactor' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating GeneticsPed-Ex.R ... OK * checking examples ... OK * checking tests ... make[1]: Entering directory `/extra/loc/biocbuild/bbs-2.1-bioc/meat/GeneticsPed.Rcheck/tests' Running 'doRUnit.R' make[1]: Leaving directory `/extra/loc/biocbuild/bbs-2.1-bioc/meat/GeneticsPed.Rcheck/tests' OK * checking package vignettes in 'inst/doc' ... OK * creating GeneticsPed-manual.tex ... OK * checking GeneticsPed-manual.tex ... OK
GeneticsPed.Rcheck/00install.out:
* Installing *source* package 'GeneticsPed' ... ** libs g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c ainverse.cc -o ainverse.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c eibd.cc -o eibd.o g77 -fpic -g -O2 -Wall -c ggmatmult.f -o ggmatmult.o g77 -fpic -g -O2 -Wall -c gpi.f -o gpi.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c inbreed.cc -o inbreed.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c inverseAdditive.cc -o inverseAdditive.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c meuwissen.cc -o meuwissen.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c pedSort.cc -o pedSort.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c pedtemplate.cc -o pedtemplate.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c register.cc -o register.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c sargolzaei.c -o sargolzaei.o sargolzaei.c: In function `sargolzaei': sargolzaei.c:62: warning: statement with no effect sargolzaei.c:19: warning: `S' might be used uninitialized in this function sargolzaei.c:19: warning: `MIP' might be used uninitialized in this function sargolzaei.c:19: warning: `N' might be used uninitialized in this function g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c sortped.cc -o sortped.o g++ -shared -L/usr/local/lib -o GeneticsPed.so ainverse.o eibd.o ggmatmult.o gpi.o inbreed.o inverseAdditive.o meuwissen.o pedSort.o pedtemplate.o register.o sargolzaei.o sortped.o -lg2c -lm -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** preparing package for lazy loading Loading required package: gdata Loading required package: MASS ** help >>> Building/Updating help pages for package 'GeneticsPed' Formats: text html latex example Mrode text html latex example TDT text html latex example check text html latex example codeUnit text html latex example extend text html latex example family text html latex example founder text html latex example geneContribution text html latex example generatePedigree text html latex example generation text html latex example gpi text html latex example inbreeding text html latex example model.matrix text html latex example nIndividual text html latex example pedigree text html latex example relationshipAdditive text html latex example removeIndividual text html latex example sort.pedigree text html latex example summary.pedigree text html latex example undocumented text html latex ** building package indices ... * DONE (GeneticsPed)