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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 100/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
GOstats2.3.15S. FalconLast Changed Date: 2007-08-22 13:53:39 -0700 Last Changed Rev: 26599 | lamb1 | Linux (SUSE 10.1) | x86_64 | ERROR | skipped | |
wellington | Linux (SUSE 9.2) | i686 | [ ERROR ] | skipped | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | ERROR | skipped | skipped | |
pitt | Mac OS X (10.4.10) | i386 | ERROR | skipped | skipped |
Package: GOstats |
Version: 2.3.15 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build GOstats |
RetCode: 1 |
Time: 40.9 seconds |
Status: ERROR |
PackageFile: None |
* checking for file 'GOstats/DESCRIPTION' ... OK * preparing 'GOstats': * checking DESCRIPTION meta-information ... OK * installing the package to re-build vignettes * Installing *source* package 'GOstats' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: graph Loading required package: GO.db Loading required package: AnnotationDbi Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: DBI Loading required package: RSQLite Loading required package: annotate Loading required package: RBGL Loading required package: Category Loading required package: genefilter Loading required package: survival Loading required package: splines ** help >>> Building/Updating help pages for package 'GOstats' Formats: text html latex example GOHyperG text html latex example GOHyperGResult-class text html latex GOLeaves text html latex example GOstats-defunct text html latex GOstats-package text html latex Ndists text html latex example compCorrGraph text html latex example compGdist text html latex example hyperG2Affy text html latex example hyperGTest text html latex hyperGtable text html latex example idx2dimnames text html latex example makeGOGraph text html latex example notConn text html latex example oneGOGraph text html latex example probeSetSummary text html latex shortestPath text html latex example simLL text html latex example termGraphs text html latex triadCensus text html latex example ** building package indices ... * DONE (GOstats) * creating vignettes ... ERROR Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Attaching package: 'GO.db' The following object(s) are masked from package:hgu95av2.db : db_conn, db_file Loading required package: survival Loading required package: splines Loading required package: graph Loading required package: RBGL Loading required package: Category Attaching package: 'Rgraphviz' The following object(s) are masked from package:annotate : toFile Error: processing vignette 'GOstatsHyperG.Rnw' failed with diagnostics: chunk 6 (label=nsFiltering-noGO) Error in sqliteExecStatement(con, statement, bind.data) : RS-DBI driver: (error in statement: near ",": syntax error) In addition: Warning message: In if (!is.na(L2Rlink@tagname)) L2Rlink@tagname : the condition has length > 1 and only the first element will be used Execution halted