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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 63/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
DNAcopy1.11.1Venkatraman E. SeshanLast Changed Date: 2007-07-24 06:06:50 -0700 Last Changed Rev: 25954 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | [ OK ] | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: DNAcopy |
Version: 1.11.1 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check DNAcopy_1.11.1.tar.gz |
RetCode: 0 |
Time: 25.5 seconds |
Status: OK |
CheckDir: DNAcopy.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/home/biocbuild/bbs-2.1-bioc/meat/DNAcopy.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'DNAcopy/DESCRIPTION' ... OK * this is package 'DNAcopy' version '1.11.1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'DNAcopy' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'plot.DNAcopy': plot.DNAcopy S3 methods shown with full name in documentation object 'subset.CNA': subset.CNA S3 methods shown with full name in documentation object 'subset.DNAcopy': subset.DNAcopy The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating DNAcopy-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating DNAcopy-manual.tex ... OK * checking DNAcopy-manual.tex ... OK
DNAcopy.Rcheck/00install.out:
* Installing *source* package 'DNAcopy' ... ** libs gfortran -fpic -g -O2 -Wall -c changepoints.f -o changepoints.o changepoints.f: In function 'tmax1': changepoints.f:175: warning: 'wtmxj' may be used uninitialized in this function changepoints.f:175: warning: 'wtmxi' may be used uninitialized in this function changepoints.f:175: warning: 'sxmxi' may be used uninitialized in this function gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c flchoose.c -o flchoose.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c fphyper.c -o fphyper.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c fpnorm.c -o fpnorm.o gfortran -fpic -g -O2 -Wall -c getbdry.f -o getbdry.o getbdry.f: In function 'getbdry': getbdry.f:1: warning: unused variable 'i' getbdry.f:1: warning: unused variable 'k' gfortran -fpic -g -O2 -Wall -c hybcpt.f -o hybcpt.o gfortran -fpic -g -O2 -Wall -c prune.f -o prune.o prune.f: In function 'combn': prune.f:100: warning: unused variable 'n' gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c rshared.c -o rshared.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o -lgfortran -lm -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** moving datasets to lazyload DB ** demo ** inst ** help Note: unmatched right brace in 'segment' on or after line 60 >>> Building/Updating help pages for package 'DNAcopy' Formats: text html latex example CNA text html latex example DNAcopy-internal text html latex DNAcopy text html latex coriell text html latex cytoBand text html latex getbdry text html latex plot.DNAcopy text html latex example segment text html latex example smooth.CNA text html latex example subset.CNA text html latex example subset.DNAcopy text html latex ** building package indices ... * DONE (DNAcopy)