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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 61/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
DEDS1.9.0Yuanyuan XiaoLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ WARNINGS ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: DEDS |
Version: 1.9.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check DEDS_1.9.0.tar.gz |
RetCode: 0 |
Time: 97.0 seconds |
Status: WARNINGS |
CheckDir: DEDS.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/DEDS.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'DEDS/DESCRIPTION' ... OK * this is package 'DEDS' version '1.9.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'DEDS' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING Rd files with unknown encoding: comp.B.Rd comp.ebayes.Rd comp.modF.Rd comp.modt.Rd comp.stat.Rd See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating DEDS-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating DEDS-manual.tex ... OK * checking DEDS-manual.tex ... OK WARNING: There was 1 warning, see E:/biocbld/bbs-2.1-bioc/meat/DEDS.Rcheck/00check.log for details
DEDS.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/DEDS.Rcheck ---------- Making package DEDS ------------ adding build stamp to DESCRIPTION making DLL ... making deds.d from deds.c making distance.d from distance.c making input.d from input.c making manip.d from manip.c making random.d from random.c making sampling.d from sampling.c making stat_fun.d from stat_fun.c gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c deds.c -o deds.o deds.c: In function `type2stat': deds.c:451: warning: 'test' might be used uninitialized in this function gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c distance.c -o distance.o gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c input.c -o input.o gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c manip.c -o manip.o gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c random.c -o random.o gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c sampling.c -o sampling.o gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c stat_fun.c -o stat_fun.o stat_fun.c: In function `tmixture': stat_fun.c:1083: warning: statement with no effect stat_fun.c:1061: warning: 'res' might be used uninitialized in this function windres -I e:/biocbld/bbs-2.1-bioc/R/include -i DEDS_res.rc -o DEDS_res.o gcc -shared -s -o DEDS.dll DEDS.def deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o DEDS_res.o -Le:/biocbld/bbs-2.1-bioc/R/bin -lR ... DLL made installing DLL installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help Note: unmatched right brace in 'comp.ebayes' on or after line 38 Note: unmatched right brace in 'comp.ebayes.Rd' on or after line 38 >>> Building/Updating help pages for package 'DEDS' Formats: text html latex example chm ApoA1 text html latex chm DEDS-internal text html latex chm affySpikeIn text html latex chm aggregateFun text html latex example chm comp.B text html latex example chm comp.F text html latex example chm comp.FC text html latex example chm comp.SAM text html latex example chm comp.adjp text html latex example chm comp.ebayes text html latex example chm comp.fdr text html latex example chm comp.modF text html latex example chm comp.modt text html latex example chm comp.stat text html latex example chm comp.t text html latex example chm comp.unadjp text html latex example chm deds.chooseTest text html latex example chm deds.class text html latex chm deds.genExtra text html latex example chm deds.pval text html latex example chm deds.stat text html latex example chm deds.stat.linkC text html latex example chm hist.DEDS text html latex example chm pairs.DEDS text html latex example chm qqnorm.DEDS text html latex example chm topgenes text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\DEDS.Rcheck\00_pkg_src\DEDS\chm\DEDS.chm Compile time: 0 minutes, 0 seconds 27 Topics 195 Local links 1 Internet link 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\DEDS.Rcheck\00_pkg_src\DEDS\chm\DEDS.chm, 57,131 bytes Compression decreased file by 74,714 bytes. preparing package DEDS for lazy loading adding MD5 sums * DONE (DEDS)