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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 33/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
Biobase1.15.27Biocore Team c/o BioC user listLast Changed Date: 2007-08-25 17:42:29 -0700 Last Changed Rev: 26650 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | [ OK ] | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: Biobase |
Version: 1.15.27 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build Biobase |
RetCode: 0 |
Time: 64.2 seconds |
Status: OK |
PackageFile: Biobase_1.15.27.tar.gz |
* checking for file 'Biobase/DESCRIPTION' ... OK * preparing 'Biobase': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to re-build vignettes * Installing *source* package 'Biobase' ... ** libs gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c anyMissing.c -o anyMissing.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c envir.c -o envir.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c matchpt.c -o matchpt.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c Rinit.c -o Rinit.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c rowMedians.c -o rowMedians.o gcc -std=gnu99 -shared -L/usr/local/lib -o Biobase.so anyMissing.o envir.o matchpt.o Rinit.o rowMedians.o -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** preparing package for lazy loading Loading required package: tools ** help >>> Building/Updating help pages for package 'Biobase' Formats: text html latex example Aggregate text html latex example Biobase-package text html latex ScalarObject-class text html latex example abstract text html latex addVig2Menu text html latex example annotatedDataFrameFrom-methods text html latex annotation text html latex anyMissing text html latex example assayData text html latex biocReposList text html latex example cache text html latex example channel text html latex example channelNames text html latex example class.AnnotatedDataFrame text html latex example class.AssayData text html latex class.ExpressionSet text html latex example class.MIAME text html latex class.MultiSet text html latex example class.NChannelSet text html latex example class.SnpSet text html latex class.Versioned text html latex example class.VersionedBiobase text html latex example class.Versions text html latex example class.VersionsNull text html latex example class.aggregator text html latex class.annotatedDataset text html latex class.characterORmiame text html latex class.container text html latex example class.eSet text html latex example class.exprList text html latex example class.exprMatrix text html latex class.exprSet text html latex example class.phenoData text html latex example classVersion text html latex example combine text html latex example contents text html latex example copyEnv text html latex example copySubstitute text html latex example createPackage text html latex example data.aaMap text html latex example data.eset text html latex example data.geneData text html latex example data.reporter text html latex example data.sample.ExpressionSet text html latex example data.sample.eSet text html latex example data.sample.exprSet.1 text html latex example data.sample.exprSet text html latex example defunct text html latex description text html latex dims text html latex dumpPackTxt text html latex example esApply text html latex example exprs text html latex featureData text html latex featureNames text html latex getPkgVigs text html latex example internals text html latex isCurrent text html latex example isUnique text html latex example isVersioned text html latex example lcSuffix text html latex example listLen text html latex example makeDataPackage text html latex example matchpt text html latex example multiassign text html latex example note text html latex example notes text html latex openPDF text html latex example openVignette text html latex example package.version text html latex example phenoData text html latex read.AnnotatedDataFrame text html latex example read.MIAME text html latex example read.exprSet text html latex example read.phenoData text html latex example readExpressionSet text html latex example reporterInfo text html latex reverseSplit text html latex example rowMedians text html latex example rowQ text html latex example selectChannels text html latex example selectSome text html latex example storageMode text html latex strbreak text html latex example testBioCConnection text html latex example updateObject text html latex example updateOldESet text html latex example userQuery text html latex example ** building package indices ... Loading required package: methods * DONE (Biobase) * creating vignettes ... OK * cleaning src * removing junk files * checking for LF line-endings in source files * checking for empty or unneeded directories * building 'Biobase_1.15.27.tar.gz'