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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 30/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
BeadExplorer1.3.0Gareth ElvidgeLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ OK ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: BeadExplorer |
Version: 1.3.0 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check BeadExplorer_1.3.0.tar.gz |
RetCode: 0 |
Time: 205.9 seconds |
Status: OK |
CheckDir: BeadExplorer.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/BeadExplorer.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'BeadExplorer/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'BeadExplorer' version '1.3.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'BeadExplorer' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE batchAnalysis: no visible binding for global variable 'output' beadAnalysis: no visible binding for global variable 'examplebeadData' beadAnalysis: no visible binding for global variable 'examplebeadQC' boxplotArrays: no visible binding for global variable 'oqc' getQC2: no visible binding for global variable 'HumWG6' getQC2: no visible binding for global variable 'HumRef8' Found possibly global 'T' or 'F' in the following function: boxplotQC * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating BeadExplorer-Ex.R ... OK * checking examples ... OK * creating BeadExplorer-manual.tex ... OK * checking BeadExplorer-manual.tex ... OK
BeadExplorer.Rcheck/00install.out:
* Installing *source* package 'BeadExplorer' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: widgetTools Loading required package: tcltk Loading Tcl/Tk interface ... done Loading required package: affy Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affyio Loading required package: preprocessCore Loading required package: R2HTML Loading required package: tkWidgets Loading required package: DynDoc ** help Note: unmatched right brace in 'beadData-class' on or after line 61 Note: unmatched right brace in 'readQC' on or after line 23 Note: unmatched right brace in 'scatterPlot' on or after line 44 >>> Building/Updating help pages for package 'BeadExplorer' Formats: text html latex example HumRef8v1 text html latex example HumWG6v1 text html latex example addManifest text html latex example batchAnalysis text html latex example beadAnalysis text html latex example beadData-accessor text html latex beadData-class text html latex example beadQC-class text html latex example boxplotArrays text html latex example boxplotQC text html latex example clusterplot text html latex example cutoff text html latex example detectionCalls text html latex example dotplotArrays text html latex example dotplotQC text html latex example examplebeadData text html latex example examplebeadQC text html latex example extract text html latex example filterData text html latex example getAnnot text html latex example getArrayStats text html latex example getDet text html latex example getExprs text html latex example getID text html latex example getQC text html latex example getQC2 text html latex example htmloutput text html latex example multiDensity text html latex example multiecdf text html latex example normalise text html latex example pc text html latex example plotSamples text html latex example readBead text html latex example readManifest text html latex example readQC text html latex example scatterPlot text html latex example write.beadData text html latex example writeQC text html latex example ** building package indices ... * DONE (BeadExplorer)