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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 1/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
ABarray1.5.1Yongming Andrew SunLast Changed Date: 2007-05-03 11:47:04 -0700 Last Changed Rev: 24491 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ WARNINGS ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: ABarray |
Version: 1.5.1 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check ABarray_1.5.1.tar.gz |
RetCode: 0 |
Time: 111.1 seconds |
Status: WARNINGS |
CheckDir: ABarray.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/ABarray.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'ABarray/DESCRIPTION' ... OK * this is package 'ABarray' version '1.5.1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'ABarray' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... WARNING 'library' or 'require' calls not declared from: tcltk See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ABarray: no visible binding for global variable 'colSn' ABarrayGUI : getImputeFunc: no visible binding for global variable 'knnRbtn' getPantherMap: no visible binding for global variable 'panther' Found possibly global 'T' or 'F' in the following functions: ABarray ABarrayGUI calcsn concord cvv cvvPlot doANOVA doLPE doPlotEset doPlotFCT hclusterPlot icpPlot imputeFlag mamaplot mvaPair2 qnNormalize snSummary * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating ABarray-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating ABarray-manual.tex ... OK * checking ABarray-manual.tex ... OK WARNING: There was 1 warning, see /extra/loc/biocbuild/bbs-2.1-bioc/meat/ABarray.Rcheck/00check.log for details
ABarray.Rcheck/00install.out:
* Installing *source* package 'ABarray' ... ** R ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: multtest Loading required package: survival Loading required package: splines ** help >>> Building/Updating help pages for package 'ABarray' Formats: text html latex example ABarray text html latex example ABarrayGUI text html latex example calcsn text html latex example concord text html latex example cvv text html latex example cvvPlot text html latex example doANOVA text html latex example doLPE text html latex example doPlotEset text html latex example doPlotFCT text html latex example doVennDiagram text html latex example drawVennDiagram text html latex example getMemberEset text html latex example getPantherMap text html latex example hclusterPlot text html latex example icpPlot text html latex example imputeFlag text html latex example lpe.fdr.BH text html latex example mamaplot text html latex example matrixPlot text html latex example mvaPair2 text html latex example panel.cor text html latex example panel.scatter text html latex example qnNormalize text html latex example rgcolorsfunc text html latex example savejpg text html latex example scaleColorBar text html latex example snSummary text html latex example ** building package indices ... * DONE (ABarray)