Package: preprocessCore

Version: 0.99.7

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check preprocessCore_0.99.7.tar.gz

RetCode: 0

Time: 41.5 seconds

Status: OK

CheckDir: preprocessCore.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/preprocessCore.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-06-03 r41797)
* checking for file 'preprocessCore/DESCRIPTION' ... OK
* this is package 'preprocessCore' version '0.99.7'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'preprocessCore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating preprocessCore-Ex.R ... OK
* checking examples ... OK
* creating preprocessCore-manual.tex ... OK
* checking preprocessCore-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/preprocessCore.Rcheck


---------- Making package preprocessCore ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making avg_log.d from avg_log.c
making biweight.d from biweight.c
making init_package.d from init_package.c
making lm.d from lm.c
making log_avg.d from log_avg.c
making matrix_functions.d from matrix_functions.c
making medianpolish.d from medianpolish.c
making psi_fns.d from psi_fns.c
making qnorm.d from qnorm.c
making rlm.d from rlm.c
making rlm_anova.d from rlm_anova.c
making rlm_se.d from rlm_se.c
making rma_common.d from rma_common.c
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c avg_log.c -o avg_log.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c biweight.c -o biweight.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c init_package.c -o init_package.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c lm.c -o lm.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c log_avg.c -o log_avg.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c matrix_functions.c -o matrix_functions.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c medianpolish.c -o medianpolish.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c psi_fns.c -o psi_fns.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c qnorm.c -o qnorm.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c rlm.c -o rlm.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c rlm_anova.c -o rlm_anova.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c rlm_se.c -o rlm_se.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c rma_common.c -o rma_common.o
windres -I d:/biocbld/bbs-2.1-bioc/R/include  -i preprocessCore_res.rc -o preprocessCore_res.o
gcc  -shared -s  -o preprocessCore.dll preprocessCore.def avg_log.o biweight.o init_package.o lm.o log_avg.o matrix_functions.o medianpolish.o psi_fns.o qnorm.o rlm.o rlm_anova.o rlm_se.o rma_common.o preprocessCore_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin -lg2c -Ld:/biocbld/bbs-2.1-bioc/R/bin -lRlapack -Ld:/biocbld/bbs-2.1-bioc/R/bin -lRblas   -lR
  ... DLL made
  installing DLL
  installing R files
  preparing package preprocessCore for lazy loading
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'preprocessCore'
     Formats: text html latex example chm 
  normalize.quantiles               text    html    latex           chm
  normalize.quantiles.in.blocks     text    html    latex   example chm
  normalize.quantiles.robust        text    html    latex           chm
  normalize.quantiles.target        text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\preprocessCore.Rcheck\00_pkg_src\preprocessCore\chm\preprocessCore.chm


Compile time: 0 minutes, 0 seconds
5	Topics
12	Local links
6	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\preprocessCore.Rcheck\00_pkg_src\preprocessCore\chm\preprocessCore.chm, 21,237 bytes
Compression increased file by 76 bytes.
  adding MD5 sums

* DONE (preprocessCore)