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NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier |
Package 167/238 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
pickgene1.9.0Brian S. YandellLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | OK | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | [ OK ] | skipped |
Package: pickgene |
Version: 1.9.0 |
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check pickgene_1.9.0.tar.gz |
RetCode: 0 |
Time: 43.5 seconds |
Status: OK |
CheckDir: pickgene.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/bbs-2.1-bioc/meat/pickgene.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-06-03 r41797) * checking for file 'pickgene/DESCRIPTION' ... OK * this is package 'pickgene' version '1.9.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'pickgene' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE lod.plot: possible error in oddsplot(exp(data[[x]]), exp(data[[y]]), theta, col = col, xlab = xlab, ylab = ylab, chip = ""): unused argument(s) (chip = "") nloglik: no visible binding for global variable '.fit.xx' nloglik: no visible binding for global variable '.fit.yy' nploglik: no visible binding for global variable '.fit.xx' nploglik: no visible binding for global variable '.fit.yy' nploglik: no visible binding for global variable '.fit.zz' s.check1: no visible global function definition for 'lod' s.marg: no visible binding for global variable 'x' s.marg: no visible binding for global variable 'x' shrinkplot: no visible global function definition for 's.fits' shrinkplot: no visible binding for global variable 'lims' shrinkplot: no visible binding for global variable 'lims' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating pickgene-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating pickgene-manual.tex ... OK * checking pickgene-manual.tex ... OK
pickgene.Rcheck/00install.out:
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/pickgene.Rcheck ---------- Making package pickgene ------------ adding build stamp to DESCRIPTION installing R files installing inst files installing man source files installing indices installing help >>> Building/Updating help pages for package 'pickgene' Formats: text html latex example chm Simulation.pickgene text html latex example chm em.ggb text html latex example chm model.pickgene text html latex example chm oddsplot text html latex example chm pickgene-internal text html latex chm pickgene text html latex example chm robustscale text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\bbs-2.1-bioc\meat\pickgene.Rcheck\00_pkg_src\pickgene\chm\pickgene.chm Compile time: 0 minutes, 0 seconds 8 Topics 16 Local links 0 Internet links 1 Graphic Created d:\biocbld\bbs-2.1-bioc\meat\pickgene.Rcheck\00_pkg_src\pickgene\chm\pickgene.chm, 30,637 bytes Compression decreased file by 11,656 bytes. preparing package pickgene for lazy loading Loading required package: MASS adding MD5 sums * DONE (pickgene)