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NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier
Package 154/238HostnameOSArchBUILDCHECKBUILD BIN

oneChannelGUI

1.3.9

Raffaele A Calogero
Last Changed Date: 2007-06-01 02:16:24 -0700
Last Changed Rev: 25096
lamb1 Linux (SUSE 10.1) x86_64  ERROR skipped
wellington Linux (SUSE 9.2) i686  ERROR skipped
churchill Solaris 2.9 sparc  TIMEOUT skipped
lemming Windows Server 2003 (32-bit) x64  OK [ WARNINGS ]skipped
Package: oneChannelGUI
Version: 1.3.9
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check oneChannelGUI_1.3.9.tar.gz
RetCode: 0
Time: 242.4 seconds
Status: WARNINGS
CheckDir: oneChannelGUI.Rcheck
Warnings: 1

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/oneChannelGUI.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-06-03 r41797)
* checking for file 'oneChannelGUI/DESCRIPTION' ... OK
* this is package 'oneChannelGUI' version '1.3.9'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'oneChannelGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  affyPLM
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.aptDir: no visible binding for global variable '.affylmGUIglobals'
.aptDir: no visible binding for global variable '.affylmGUIglobals'
.aptDir: no visible binding for global variable '.affylmGUIglobals'
.aptDir: no visible binding for global variable '.affylmGUIglobals'
.aptDir: no visible binding for global variable '.affylmGUIglobals'
.aptDir: no visible binding for global variable '.affylmGUIglobals'
.delta.plot1: no visible global function definition for 'nobs'
addAnnLib: no visible binding for global variable
  'affylmGUIenvironment'
addAnnLib: no visible binding for global variable
  'affylmGUIenvironment'
addAnnLib: no visible binding for global variable '.affylmGUIglobals'
addAnnLib: no visible binding for global variable '.affylmGUIglobals'
addAnnLib: no visible binding for global variable '.affylmGUIglobals'
addAnnLib : onOK: no visible binding for global variable
  'affylmGUIenvironment'
addAnnLib : onOK: no visible binding for global variable
  '.affylmGUIglobals'
addAnnLib: no visible binding for global variable '.affylmGUIglobals'
addAnnLib : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
addAnnLib: no visible binding for global variable '.affylmGUIglobals'
changeMenu: no visible binding for global variable
  'affylmGUIenvironment'
changeMenu: no visible binding for global variable '.affylmGUIglobals'
changeMenu: no visible binding for global variable '.affylmGUIglobals'
changeMenu: no visible binding for global variable
  'affylmGUIenvironment'
changeMenu: no visible binding for global variable
  'affylmGUIenvironment'
changeMenu: no visible binding for global variable '.affylmGUIglobals'
changeMenu: no visible binding for global variable '.affylmGUIglobals'
changeMenu: no visible binding for global variable
  'affylmGUIenvironment'
changeMenu: no visible binding for global variable
  'affylmGUIenvironment'
changeMenu: no visible binding for global variable '.affylmGUIglobals'
changeMenu: no visible binding for global variable '.affylmGUIglobals'
changeMenu: no visible binding for global variable
  'affylmGUIenvironment'
changeMenu: no visible binding for global variable
  'affylmGUIenvironment'
changeMenu: no visible binding for global variable '.affylmGUIglobals'
changeMenu: no visible binding for global variable '.affylmGUIglobals'
changeMenu: no visible binding for global variable
  'affylmGUIenvironment'
changeMenu: no visible binding for global variable
  'affylmGUIenvironment'
changeMenu: no visible binding for global variable '.affylmGUIglobals'
changeMenu: no visible binding for global variable '.affylmGUIglobals'
changeMenu: no visible binding for global variable
  'affylmGUIenvironment'
changeMenu: no visible binding for global variable
  'affylmGUIenvironment'
delPLM: no visible binding for global variable 'affylmGUIenvironment'
delPLM: no visible binding for global variable 'affylmGUIenvironment'
delPLM: no visible binding for global variable 'affylmGUIenvironment'
delPLM: no visible binding for global variable '.affylmGUIglobals'
delPLM: no visible binding for global variable '.affylmGUIglobals'
delPLM: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot : onOK: no visible binding for '<<-' assignment to 'ReturnVal'
dfMAplot : onOK: no visible binding for global variable
  '.affylmGUIglobals'
dfMAplot : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
dfMAplot: no visible binding for global variable 'ReturnVal'
ExportNormalizedExpressionValues: no visible binding for global
  variable 'affylmGUIenvironment'
ExportNormalizedExpressionValues: no visible binding for global
  variable 'affylmGUIenvironment'
ExportNormalizedExpressionValues: no visible binding for global
  variable 'affylmGUIenvironment'
ExportNormalizedExpressionValues: no visible binding for global
  variable 'affylmGUIenvironment'
ExportNormalizedExpressionValues: no visible binding for global
  variable 'affylmGUIenvironment'
extractAffyids: no visible binding for global variable
  '.affylmGUIglobals'
extractAffyids: no visible binding for global variable
  '.affylmGUIglobals'
extractAffyids: no visible binding for global variable
  '.affylmGUIglobals'
extractAffyids : onOK: no visible binding for global variable
  'affylmGUIenvironment'
extractAffyids: no visible binding for global variable
  '.affylmGUIglobals'
extractAffyids : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
extractAffyids: no visible binding for global variable
  '.affylmGUIglobals'
extractAffyids: no visible binding for global variable
  'affylmGUIenvironment'
extractAffyids : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
extractAffyids: no visible binding for global variable
  'affylmGUIenvironment'
extractAffyids: no visible global function definition for 'aafTableAnn'
extractAffyids: no visible global function definition for 'aaf.handler'
extractAffyids : SaveHtmlTable: no visible global function definition
  for 'saveHTML'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment : onOK: no visible binding for '<<-' assignment to
  'ReturnVal'
GOenrichment : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable 'ReturnVal'
GOenrichment: no visible binding for global variable
  'affylmGUIenvironment'
GOenrichment : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible global function definition for 'hyperGTest'
GOenrichment: no visible global function definition for
  'universeCounts'
GOenrichment: no visible global function definition for 'pvalues'
GOenrichment: no visible global function definition for 'geneIds'
GOenrichment: no visible global function definition for
  'universeMappedCount'
GOenrichment: no visible global function definition for 'conditional<-'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible global function definition for 'GOGraph'
GOenrichment: no visible binding for global variable 'GOBPPARENTS'
GOenrichment: no visible global function definition for 'nodes'
GOenrichment: no visible global function definition for 'nodes'
GOenrichment: no visible global function definition for 'makeNodeAttrs'
GOenrichment: no visible global function definition for 'nodes'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOstatsHelp: no visible binding for global variable 'GOstatsHelpIndex'
GOstatsHelp: no visible binding for global variable 'GOstatsHelpIndex'
initialize.extAffylmGUI: no visible binding for global variable
  '.affylmGUIglobals'
initialize.extAffylmGUI: no visible binding for global variable
  '.affylmGUIglobals'
initialize.extAffylmGUI: no visible binding for global variable
  'affylmGUIenvironment'
initialize.extAffylmGUI: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.one.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.one.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.one.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.one.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.one.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index : onOK: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index : onOK: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index : onOK: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index : onOK: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter : onOK: no visible binding for '<<-' assignment to
  'ReturnVal'
intensityFilter : onOK: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter : onCancel: no visible binding for '<<-' assignment to
  'ReturnVal'
intensityFilter : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable 'ReturnVal'
intensityFilter: no visible binding for global variable 'ReturnVal'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible global function definition for 'pOverA'
intensityFilter: no visible global function definition for 'filterfun'
intensityFilter: no visible global function definition for 'genefilter'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter : onOK: no visible binding for '<<-' assignment to
  'ReturnVal'
intensityFilter : onOK: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter : onCancel: no visible binding for '<<-' assignment to
  'ReturnVal'
intensityFilter : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable 'ReturnVal'
intensityFilter: no visible binding for global variable 'ReturnVal'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible global function definition for 'pOverA'
intensityFilter: no visible global function definition for 'filterfun'
intensityFilter: no visible global function definition for 'genefilter'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intronicBg: no visible binding for global variable
  'affylmGUIenvironment'
intronicBg: no visible binding for global variable
  'affylmGUIenvironment'
intronicBg: no visible binding for global variable '.affylmGUIglobals'
intronicBg: no visible binding for global variable '.affylmGUIglobals'
intronicBg: no visible binding for global variable '.affylmGUIglobals'
intronicBg: no visible binding for global variable '.affylmGUIglobals'
intronicBg: no visible binding for global variable '.affylmGUIglobals'
intronicBg: no visible binding for global variable '.affylmGUIglobals'
intronicBg: no visible binding for global variable '.affylmGUIglobals'
intronicBg : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
intronicBg : onOK: no visible binding for global variable
  'affylmGUIenvironment'
intronicBg : onOK: no visible binding for global variable
  'affylmGUIenvironment'
intronicBg : onOK: no visible binding for global variable
  '.affylmGUIglobals'
intronicBg: no visible binding for global variable '.affylmGUIglobals'
intronicBg: no visible binding for global variable '.affylmGUIglobals'
intronicBg : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
IPAlistFilter: no visible binding for global variable
  'affylmGUIenvironment'
IPAlistFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
IPAlistFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
IPAlistFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
IPAlistFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
IPAlistFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
IPAlistFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
iqrFilter : onOK: no visible binding for global variable
  '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter: no visible global function definition for 'filterfun'
iqrFilter: no visible global function definition for 'genefilter'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter: no visible global function definition for 'filterfun'
iqrFilter: no visible global function definition for 'genefilter'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
libraryFilesDir: no visible binding for global variable
  '.affylmGUIglobals'
libraryFilesDir: no visible binding for global variable
  '.affylmGUIglobals'
libraryFilesDir: no visible binding for global variable
  '.affylmGUIglobals'
libraryFilesDir: no visible binding for global variable
  '.affylmGUIglobals'
libraryFilesDir: no visible binding for global variable
  '.affylmGUIglobals'
libraryFilesDir: no visible binding for global variable
  '.affylmGUIglobals'
listFilter: no visible binding for global variable
  'affylmGUIenvironment'
listFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
listFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
listFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
listFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
listFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
listFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
listFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
listFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
listFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
listFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
masigpro: no visible binding for global variable 'affylmGUIenvironment'
masigpro: no visible binding for global variable 'affylmGUIenvironment'
masigpro: no visible global function definition for
  'make.design.matrix'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro : onOK: no visible binding for global variable
  '.affylmGUIglobals'
masigpro : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
masigpro: no visible binding for global variable 'affylmGUIenvironment'
masigpro: no visible global function definition for 'p.vector'
masigpro: no visible global function definition for 'T.fit'
masigpro: no visible global function definition for 'get.siggenes'
masigpro: no visible binding for global variable 'affylmGUIenvironment'
masigpro: no visible binding for global variable 'affylmGUIenvironment'
masigpro.edesign: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.edesign: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.edesign: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.edesign: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.edesign: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.edesign: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.edesign: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.edesign: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.edesign: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.edesign : onClose: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.edesign: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.edesign : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view : onCancel: no visible binding for global variable
  'ttGmaSigProViewMethod'
masigpro.view : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view : onOK: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.view : plotFunction: no visible binding for global variable
  'include'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible global function definition for 'tkrplot'
masigpro.view: no visible binding for global variable
  'limmaDataSetNameText'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view : onOK: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.view: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.view: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.view: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view : onOK: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.view: no visible global function definition for 'PlotGroups'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable '.affylmGUIglobals'
ML.edesign: no visible binding for global variable '.affylmGUIglobals'
ML.edesign: no visible binding for global variable '.affylmGUIglobals'
ML.edesign : onClose: no visible binding for global variable
  '.affylmGUIglobals'
ML.edesign: no visible binding for global variable '.affylmGUIglobals'
ML.edesign : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable '.affylmGUIglobals'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable '.affylmGUIglobals'
ML.edesign: no visible binding for global variable '.affylmGUIglobals'
ML.edesign: no visible binding for global variable '.affylmGUIglobals'
ML.edesign : onClose: no visible binding for global variable
  '.affylmGUIglobals'
ML.edesign: no visible binding for global variable '.affylmGUIglobals'
ML.edesign : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
myExpresso: no visible binding for global variable '.affylmGUIglobals'
myExpresso: no visible binding for global variable
  'affylmGUIenvironment'
myExpresso: no visible binding for global variable
  'affylmGUIenvironment'
myExpresso: no visible binding for global variable
  'affylmGUIenvironment'
myExpresso: no visible binding for global variable '.affylmGUIglobals'
myExpresso: no visible binding for global variable '.affylmGUIglobals'
myExpresso: no visible binding for global variable '.affylmGUIglobals'
myExpresso: no visible binding for global variable '.affylmGUIglobals'
myPLM: no visible binding for global variable '.affylmGUIglobals'
myPLM: no visible binding for global variable 'affylmGUIenvironment'
myPLM: no visible global function definition for 'fitPLM'
myPLM: no visible binding for global variable 'affylmGUIenvironment'
myPLM: no visible binding for global variable 'affylmGUIenvironment'
myPLM: no visible binding for global variable '.affylmGUIglobals'
myPLM: no visible binding for global variable '.affylmGUIglobals'
myPLM: no visible binding for global variable '.affylmGUIglobals'
myPLM: no visible binding for global variable '.affylmGUIglobals'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotHist: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotHist: no visible binding for global variable '.affylmGUIglobals'
ocPlotHist: no visible binding for global variable '.affylmGUIglobals'
ocPlotHist: no visible binding for global variable '.affylmGUIglobals'
ocPlotHist : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
ocPlotHist : onOK: no visible binding for global variable
  '.affylmGUIglobals'
ocPlotHist: no visible binding for global variable '.affylmGUIglobals'
ocPlotHist: no visible binding for global variable '.affylmGUIglobals'
ocPlotHist : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
ocPlotHist: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotHist: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotPCA: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotPCA: no visible binding for global variable '.affylmGUIglobals'
ocPlotPCA: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotPCA: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotPCA: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotPCA: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotPCA: no visible binding for global variable '.affylmGUIglobals'
ocPlotPCA: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotPCA: no visible binding for global variable '.affylmGUIglobals'
ocPlotPCA: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotPCA: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotPCA: no visible binding for global variable '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
OpenAFile: no visible binding for global variable '.affylmGUIglobals'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenCDFandTargetsfiles : onOK: no visible binding for global variable
  'affylmGUIenvironment'
OpenCDFandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenCDFandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenCDFandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenCDFandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenCDFandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles : onOK: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenLargefiles : onOK: no visible binding for global variable
  'affylmGUIenvironment'
OpenLargefiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenLargefiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenLargefiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenLargefiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenLargefiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenLargefiles: no visible binding for global variable
  'affylmGUIenvironment'
PLM.plots: no visible binding for global variable
  'affylmGUIenvironment'
PLM.plots: no visible binding for global variable '.affylmGUIglobals'
PLM.plots: no visible binding for global variable '.affylmGUIglobals'
PLM.plots: no visible binding for global variable '.affylmGUIglobals'
PLM.plots : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
PLM.plots : onOK: no visible binding for global variable
  '.affylmGUIglobals'
PLM.plots: no visible binding for global variable '.affylmGUIglobals'
PLM.plots: no visible binding for global variable '.affylmGUIglobals'
PLM.plots : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
PLM.plots: no visible binding for global variable
  'affylmGUIenvironment'
PLM.plots: no visible binding for global variable
  'affylmGUIenvironment'
PLM.plots: no visible global function definition for 'se'
PLM.plots: no visible global function definition for 'se<-'
PLM.plots: no visible global function definition for 'coefs'
PLM.plots: no visible global function definition for 'coefs<-'
PLM.plots: no visible binding for global variable '.affylmGUIglobals'
PLM.plots: no visible global function definition for 'NUSE'
PLM.plots: no visible binding for global variable '.affylmGUIglobals'
PLM.plots: no visible binding for global variable '.affylmGUIglobals'
PLM.plots: no visible global function definition for 'RLE'
PLM.plots: no visible binding for global variable '.affylmGUIglobals'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO : onOK: no visible binding for global variable
  'affylmGUIenvironment'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO: no visible binding for global variable 'affylmGUIenvironment'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
plotGO : onOK: no visible binding for global variable
  '.affylmGUIglobals'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
plotGO: no visible global function definition for 'GOGraph'
plotGO: no visible binding for global variable 'GOBPPARENTS'
plotGO: no visible global function definition for 'nodes'
plotGO: no visible global function definition for 'removeNode'
plotGO: no visible global function definition for 'nodes'
plotGO: no visible global function definition for 'getGOTerm'
plotGO: no visible global function definition for 'GOGraph'
plotGO: no visible binding for global variable 'GOMFPARENTS'
plotGO: no visible global function definition for 'nodes'
plotGO: no visible global function definition for 'removeNode'
plotGO: no visible global function definition for 'nodes'
plotGO: no visible global function definition for 'getGOTerm'
plotGO: no visible global function definition for 'GOGraph'
plotGO: no visible binding for global variable 'GOCCPARENTS'
plotGO: no visible global function definition for 'nodes'
plotGO: no visible global function definition for 'removeNode'
plotGO: no visible global function definition for 'nodes'
plotGO: no visible global function definition for 'getGOTerm'
PlotOptionsv1: no visible binding for global variable
  '.affylmGUIglobals'
PlotOptionsv1: no visible binding for global variable
  '.affylmGUIglobals'
PlotOptionsv1: no visible binding for global variable
  '.affylmGUIglobals'
PlotOptionsv1: no visible binding for global variable
  '.affylmGUIglobals'
PlotOptionsv1 : onOK: no visible binding for global variable
  '.affylmGUIglobals'
PlotOptionsv1: no visible binding for global variable
  '.affylmGUIglobals'
PlotOptionsv1 : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
PlotOptionsv1: no visible binding for global variable
  '.affylmGUIglobals'
PlotOptionsv1: no visible binding for global variable
  '.affylmGUIglobals'
PlotOptionsv1 : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
rawpCheck: no visible binding for global variable
  'affylmGUIenvironment'
rawpCheck: no visible binding for global variable
  'affylmGUIenvironment'
rawpCheck: no visible binding for global variable
  'affylmGUIenvironment'
rawpCheck: no visible binding for global variable
  'affylmGUIenvironment'
rawpCheck: no visible binding for global variable '.affylmGUIglobals'
rawpCheck: no visible binding for global variable '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation : onOK: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation : onOK: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation : onOK: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation : common.sd: no visible binding for global
  variable 'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation : onCancel: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation : onOK: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation: no visible global function definition for
  'mt.teststat'
sample.size.evaluation: no visible global function definition for
  'mt.rawp2adjp'
sample.size.evaluation: no visible global function definition for
  'ssize'
sample.size.evaluation: no visible global function definition for
  'ssize.plot'
sample.size.evaluation: no visible global function definition for
  'nobs'
sample.size.evaluation: no visible global function definition for
  'delta'
sample.size.evaluation: no visible global function definition for
  'nobs'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation1: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation1: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation1: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation1: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1 : onCancel: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation1 : onOK: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1 : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1 : common.sd: no visible binding for global
  variable 'affylmGUIenvironment'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1 : onOK: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1 : onCancel: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1 : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible global function definition for
  'sampleSize.randomized'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1 : onOK: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1 : onCancel: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1 : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible global function definition for
  'power.randomized'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
SaveAsLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
  '.affylmGUIglobals'
SaveAsLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
  '.affylmGUIglobals'
SaveAsLimmaFile: no visible binding for global variable
  '.affylmGUIglobals'
SaveAsLimmaFile: no visible binding for global variable
  '.affylmGUIglobals'
SaveAsLimmaFile: no visible binding for global variable
  '.affylmGUIglobals'
SaveAsLimmaFile: no visible binding for global variable
  '.affylmGUIglobals'
SaveAsLimmaFile: no visible binding for global variable
  '.affylmGUIglobals'
SaveAsLimmaFile: no visible binding for global variable
  '.affylmGUIglobals'
SaveAsLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
  '.affylmGUIglobals'
SaveAsLimmaFile: no visible binding for global variable
  '.affylmGUIglobals'
showDataset: no visible binding for global variable
  'affylmGUIenvironment'
showDataset: no visible binding for global variable
  'affylmGUIenvironment'
showDataset: no visible binding for global variable
  'affylmGUIenvironment'
showDataset: no visible binding for global variable
  'affylmGUIenvironment'
showDataset: no visible binding for global variable
  'affylmGUIenvironment'
showDataset: no visible binding for global variable
  'affylmGUIenvironment'
showDataset: no visible binding for global variable
  'affylmGUIenvironment'
showDataset: no visible binding for global variable
  'affylmGUIenvironment'
showDataset: no visible binding for global variable
  'affylmGUIenvironment'
showDataset: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
siggenes: no visible binding for global variable 'affylmGUIenvironment'
siggenes: no visible binding for global variable 'affylmGUIenvironment'
siggenes: no visible global function definition for 'sam'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes : onOK: no visible binding for global variable
  'affylmGUIenvironment'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes: no visible binding for global variable 'affylmGUIenvironment'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes : onOK: no visible binding for global variable
  'affylmGUIenvironment'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes: no visible binding for global variable 'affylmGUIenvironment'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes: no visible binding for global variable '.affylmGUIglobals'
spliceIndex: no visible binding for global variable '.affylmGUIglobals'
spliceIndex: no visible binding for global variable
  'affylmGUIenvironment'
spliceIndex: no visible binding for global variable
  'affylmGUIenvironment'
spliceIndex: no visible binding for global variable
  'affylmGUIenvironment'
spliceIndex: no visible binding for global variable
  'affylmGUIenvironment'
spliceIndex: no visible binding for global variable
  'affylmGUIenvironment'
spliceIndex: no visible binding for global variable '.affylmGUIglobals'
spliceIndex: no visible binding for global variable '.affylmGUIglobals'
spliceIndex: no visible binding for global variable '.affylmGUIglobals'
spliceIndex: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA : onOK: no visible binding for '<<-' assignment to 'ReturnVal'
templA : onOK: no visible binding for global variable
  '.affylmGUIglobals'
templA : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable '.affylmGUIglobals'
templA : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
templA: no visible binding for global variable 'ReturnVal'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
trainTest : onOK: no visible binding for global variable
  '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : onOK: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: possible error in Try(x = exprs(testAffyData)): unused
  argument(s) (x = exprs(testAffyData))
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible global function definition for 'pamr.train'
trainTest: no visible global function definition for 'pamr.cv'
trainTest: no visible global function definition for 'pamr.plotcv'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : onOK: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible global function definition for 'pamr.plotcen'
trainTest: no visible global function definition for 'pamr.confusion'
trainTest: no visible global function definition for 'pamr.plotcvprob'
trainTest: no visible global function definition for 'pamr.listgenes'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible global function definition for 'pamr.listgenes'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible global function definition for 'pamr.train'
trainTest: no visible global function definition for 'pamr.cv'
trainTest: no visible global function definition for 'pamr.plotcv'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : onOK: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible global function definition for 'pamr.plotcen'
trainTest: no visible global function definition for 'pamr.confusion'
trainTest: no visible global function definition for 'pamr.plotcvprob'
trainTest: no visible global function definition for 'pamr.listgenes'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
trainTest : onOK: no visible binding for global variable
  '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible global function definition for 'pdmClass'
trainTest: no visible global function definition for 'pdmClass.cv'
trainTest: no visible global function definition for 'confusion'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : onOK: no visible binding for global variable
  '.affylmGUIglobals'
trainTest : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
trainTest: no visible global function definition for 'pdmGenes'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible global function definition for 'pdmClass'
trainTest: no visible global function definition for 'pdmClass.cv'
trainTest: no visible global function definition for 'confusion'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : onOK: no visible binding for global variable
  '.affylmGUIglobals'
trainTest : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
trainTest: no visible global function definition for 'pdmGenes'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
VennDiagram : onOK: no visible binding for global variable
  '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
VennDiagram : onOK: no visible binding for global variable
  '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable
  'affylmGUIenvironment'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram : plotFunction: no visible binding for global variable
  'include'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram: no visible global function definition for 'tkrplot'
VennDiagram: no visible binding for global variable
  'limmaDataSetNameText'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  'affylmGUIenvironment'
whichKindOfArray: no visible binding for global variable
  'affylmGUIenvironment'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray : onOK: no visible binding for '<<-' assignment to
  'ReturnVal'
whichKindOfArray : onOK: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable 'ReturnVal'
whichKindOfArray: no visible binding for global variable
  'affylmGUIenvironment'
whichKindOfArray: no visible binding for global variable
  'affylmGUIenvironment'
whichKindOfArray: no visible binding for global variable
  'affylmGUIenvironment'
whichKindOfArray: no visible binding for global variable
  'affylmGUIenvironment'
whichKindOfArray: no visible binding for global variable
  'affylmGUIenvironment'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray : onOK: no visible binding for '<<-' assignment to
  'ReturnVal'
whichKindOfArray : onOK: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray : onCancel: no visible binding for '<<-' assignment to
  'ReturnVal'
whichKindOfArray : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable 'ReturnVal'
whichKindOfArray: no visible binding for global variable 'ReturnVal'
whichKindOfArray: no visible binding for global variable
  'affylmGUIenvironment'
whichKindOfArray: no visible binding for global variable
  'affylmGUIenvironment'
Found possibly global 'T' or 'F' in the following functions:
  dfMAplot extractAffyids GOenrichment intronicBg IPAlistFilter
  listFilter ML.edesign myExpresso OpenAFile OpenExonandTargetsfiles
  targetWidget templA trainTest VennDiagram whichKindOfArray
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating oneChannelGUI-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating oneChannelGUI-manual.tex ... OK
* checking oneChannelGUI-manual.tex ... OK

WARNING: There was 1 warning, see
  D:/biocbld/bbs-2.1-bioc/meat/oneChannelGUI.Rcheck/00check.log
for details

oneChannelGUI.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/oneChannelGUI.Rcheck


---------- Making package oneChannelGUI ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'oneChannelGUI'
     Formats: text html latex example chm 
  GOenrichment                      text    html    latex   example chm
  IPAlistFilter                     text    html    latex   example chm
  ML.edesign                        text    html    latex   example chm
  OpenLargefiles                    text    html    latex   example chm
  PLM.plots                         text    html    latex   example chm
  PlotOptionsv1                     text    html    latex   example chm
  VennDiagram                       text    html    latex   example chm
  delPLM                            text    html    latex   example chm
  dfMAplot                          text    html    latex   example chm
  extractAffyids                    text    html    latex   example chm
  inspecting.one.splice.index       text    html    latex   example chm
  inspecting.splice.index           text    html    latex   example chm
  intensityFilter                   text    html    latex   example chm
  iqrFilter                         text    html    latex   example chm
  listFilter                        text    html    latex   example chm
  masigpro                          text    html    latex   example chm
  masigpro.edesign                  text    html    latex   example chm
  masigpro.view                     text    html    latex   example chm
  myExpresso                        text    html    latex   example chm
  myPLM                             text    html    latex   example chm
  ocPlotHist                        text    html    latex   example chm
  ocPlotPCA                         text    html    latex   example chm
  oneChannelGUI-package             text    html    latex   example chm
  oneChannelGUI                     text    html    latex   example chm
  plotGO                            text    html    latex   example chm
  rawpCheck                         text    html    latex   example chm
  sample.size.evaluation            text    html    latex   example chm
  sample.size.evaluation1           text    html    latex   example chm
  showDataset                       text    html    latex   example chm
  showTopTable                      text    html    latex   example chm
  siggenes                          text    html    latex   example chm
  spliceIndex                       text    html    latex   example chm
  targetWidget                      text    html    latex   example chm
  templA                            text    html    latex   example chm
  trainTest                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\oneChannelGUI.Rcheck\00_pkg_src\oneChannelGUI\chm\oneChannelGUI.chm


Compile time: 0 minutes, 0 seconds
36	Topics
93	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\oneChannelGUI.Rcheck\00_pkg_src\oneChannelGUI\chm\oneChannelGUI.chm, 42,054 bytes
Compression decreased file by 41,584 bytes.
  preparing package oneChannelGUI for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affylmGUI
Loading required package: limma
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: DynDoc
  adding MD5 sums

* DONE (oneChannelGUI)