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NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier |
Package 133/238 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
maSigPro1.9.0Ana ConesaLast Changed Date: 2007-05-11 21:56:41 -0700 Last Changed Rev: 24616 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | OK | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | [ OK ] | skipped |
Package: maSigPro |
Version: 1.9.0 |
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check maSigPro_1.9.0.tar.gz |
RetCode: 0 |
Time: 109.4 seconds |
Status: OK |
CheckDir: maSigPro.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/bbs-2.1-bioc/meat/maSigPro.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-06-03 r41797) * checking for file 'maSigPro/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'maSigPro' version '1.9.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'maSigPro' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE see.genes: no visible global function definition for 'maPalette' see.genes: no visible global function definition for 'knn' stepback: no visible binding for global variable 'dis' stepfor: no visible binding for global variable 'dis' suma2Venn: no visible global function definition for 'vennDiagram' T.fit: no visible binding for '<<-' assignment to 'dis' T.fit: no visible binding for global variable 'dis' T.fit: no visible binding for global variable 'dis' T.fit: no visible binding for global variable 'dis' T.fit: no visible binding for global variable 'dis' T.fit: no visible binding for global variable 'dis' T.fit: no visible binding for global variable 'dis' T.fit: no visible binding for global variable 'dis' T.fit: no visible binding for global variable 'dis' T.fit: no visible binding for global variable 'dis' T.fit: no visible binding for global variable 'dis' T.fit: no visible binding for global variable 'dis' T.fit: no visible binding for global variable 'dis' T.fit: no visible binding for global variable 'dis' T.fit: no visible binding for global variable 'dis' two.ways.stepback: no visible binding for global variable 'dis' two.ways.stepfor: no visible binding for global variable 'dis' Found possibly global 'T' or 'F' in the following functions: PlotGroups see.genes * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating maSigPro-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating maSigPro-manual.tex ... OK * checking maSigPro-manual.tex ... OK
maSigPro.Rcheck/00install.out:
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/maSigPro.Rcheck ---------- Making package maSigPro ------------ adding build stamp to DESCRIPTION installing R files preparing package maSigPro for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'maSigPro' Formats: text html latex example chm PlotGroups text html latex example chm PlotProfiles text html latex example chm T.fit text html latex example chm average.rows text html latex example chm data.abiotic text html latex example chm edesign.OD text html latex example chm edesign.abiotic text html latex example chm edesignCT text html latex example chm edesignDR text html latex example chm get.siggenes text html latex example chm i.rank text html latex example chm maSigPro text html latex example chm make.design.matrix text html latex example chm p.vector text html latex example chm position text html latex example chm reg.coeffs text html latex example chm see.genes text html latex example chm stepback text html latex example chm stepfor text html latex example chm suma2Venn text html latex example chm two.ways.stepback text html latex example chm two.ways.stepfor text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\bbs-2.1-bioc\meat\maSigPro.Rcheck\00_pkg_src\maSigPro\chm\maSigPro.chm Compile time: 0 minutes, 0 seconds 23 Topics 137 Local links 0 Internet links 1 Graphic Created d:\biocbld\bbs-2.1-bioc\meat\maSigPro.Rcheck\00_pkg_src\maSigPro\chm\maSigPro.chm, 58,751 bytes Compression decreased file by 72,326 bytes. adding MD5 sums * DONE (maSigPro)