Back to the "Multiple platform build/check report"
Package 234/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
xcms1.9.1Colin A. SmithLast Changed Date: 2007-05-15 01:50:00 -0700 Last Changed Rev: 24657 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | ERROR | ||
churchill | Solaris 2.9 | sparc | ERROR | skipped | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | [ OK ] | OK |
Package: xcms |
Version: 1.9.1 |
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check xcms_1.9.1.tar.gz |
RetCode: 0 |
Time: 268.3 seconds |
Status: OK |
CheckDir: xcms.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/bbs-2.1-bioc/meat/xcms.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-04-17 r41210) * checking for file 'xcms/DESCRIPTION' ... OK * this is package 'xcms' version '1.9.1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'xcms' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * creating xcms-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating xcms-manual.tex ... OK * checking xcms-manual.tex ... OK
xcms.Rcheck/00install.out:
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/xcms.Rcheck ---------- Making package xcms ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making base64.d from base64.c making mzboxes.d from mzboxes.c making netCDF.d from netCDF.c making ramp.d from ramp.c making rampR.d from rampR.c making util.d from util.c making xcms.d from xcms.c gcc -I./win -D_MSC_VER -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c base64.c -o base64.o base64.c:18: warning: 'encode_group' defined but not used base64.c:46: warning: 'decode_group' defined but not used gcc -I./win -D_MSC_VER -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c mzboxes.c -o mzboxes.o gcc -I./win -D_MSC_VER -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c netCDF.c -o netCDF.o gcc -I./win -D_MSC_VER -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c ramp.c -o ramp.o ramp.c: In function `readPeaks': ramp.c:1282: warning: dereferencing type-punned pointer will break strict-aliasing rules ramp.c:1295: warning: dereferencing type-punned pointer will break strict-aliasing rules ramp.c:1499: warning: dereferencing type-punned pointer will break strict-aliasing rules ramp.c:1510: warning: dereferencing type-punned pointer will break strict-aliasing rules ramp.c:1517: warning: 'lastMass' might be used uninitialized in this function ramp.c:1518: warning: 'deltaMass' might be used uninitialized in this function ramp.c:1519: warning: 'multiplier' might be used uninitialized in this function gcc -I./win -D_MSC_VER -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c rampR.c -o rampR.o gcc -I./win -D_MSC_VER -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c util.c -o util.o gcc -I./win -D_MSC_VER -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c xcms.c -o xcms.o xcms.c: In function `ProfBinLin': xcms.c:11: warning: 'xpre' might be used uninitialized in this function xcms.c:11: warning: 'ypre' might be used uninitialized in this function xcms.c: In function `ProfBinLinBase': xcms.c:62: warning: 'ipre' might be used uninitialized in this function windres -I d:/biocbld/bbs-2.1-bioc/R/include -i xcms_res.rc -o xcms_res.o gcc -shared -s -o xcms.dll xcms.def base64.o mzboxes.o netCDF.o ramp.o rampR.o util.o xcms.o xcms_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -L./win -lws2_32 -lnetcdf -lz -lR ... DLL made installing DLL installing R files installing inst files installing man source files installing indices installing help >>> Building/Updating help pages for package 'xcms' Formats: text html latex example chm SSgauss text html latex chm c.xcmsSet text html latex chm colMax text html latex chm descendZero text html latex example chm diffreport-methods text html latex chm doubleMatrix text html latex chm etg text html latex chm fillPeaks-methods text html latex chm filtfft text html latex chm findEqualGreater text html latex chm findMZBoxes-methods text html latex chm findPeaks-methods text html latex chm findPeaks.centWave-methods text html latex chm findPeaks.matchedFilter-methods text html latex chm getEIC-methods text html latex chm getPeaks-methods text html latex chm getScan-methods text html latex chm getSpec-methods text html latex chm group-methods text html latex chm groupnames-methods text html latex chm groupval-methods text html latex chm image.xcmsRaw text html latex chm medianFilter text html latex example chm na.flatfill text html latex chm netCDF text html latex chm panel.cor text html latex chm plot.xcmsEIC text html latex chm plotChrom-methods text html latex chm plotPeaks-methods text html latex chm plotRaw-methods text html latex chm plotScan-methods text html latex chm plotSpec-methods text html latex chm plotSurf-methods text html latex chm plotTIC-methods text html latex chm plotrt-methods text html latex chm profGenerate text html latex chm profMedFilt-methods text html latex chm profMethod-methods text html latex chm profRange-methods text html latex chm profStep-methods text html latex chm pval text html latex chm ramp text html latex chm rawEIC-methods text html latex chm rectUnique text html latex example chm retcor-methods text html latex chm retexp text html latex chm sampnames-methods text html latex chm specNoise text html latex chm specPeaks text html latex chm split.xcmsSet text html latex chm xcmsEIC-class text html latex chm xcmsRaw-class text html latex chm xcmsRaw text html latex chm xcmsSet-class text html latex chm xcmsSet text html latex chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\bbs-2.1-bioc\meat\xcms.Rcheck\00_pkg_src\xcms\chm\xcms.chm Compile time: 0 minutes, 0 seconds 56 Topics 278 Local links 8 Internet links 1 Graphic Created d:\biocbld\bbs-2.1-bioc\meat\xcms.Rcheck\00_pkg_src\xcms\chm\xcms.chm, 77,423 bytes Compression decreased file by 126,505 bytes. preparing package xcms for lazy loading adding MD5 sums * DONE (xcms)