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Package 227/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
twilight1.13.0Stefanie ScheidLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | ERROR | skipped | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ OK ] | ||
churchill | Solaris 2.9 | sparc | OK | OK | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | OK |
Package: twilight |
Version: 1.13.0 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check twilight_1.13.0.tar.gz |
RetCode: 0 |
Time: 768.9 seconds |
Status: OK |
CheckDir: twilight.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/twilight.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-04-17 r41210) * checking for file 'twilight/DESCRIPTION' ... OK * this is package 'twilight' version '1.13.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'twilight' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating twilight-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating twilight-manual.tex ... OK * checking twilight-manual.tex ... OK
twilight.Rcheck/00install.out:
* Installing *source* package 'twilight' ... ** libs gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c confidence.line.c -o confidence.line.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c correlation.c -o correlation.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c kstest.c -o kstest.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c sep.c -o sep.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c twosample.perm.c -o twosample.perm.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c twosample.single.c -o twosample.single.o gcc -std=gnu99 -shared -L/usr/local/lib -o twilight.so confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** preparing package for lazy loading Loading required package: splines Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. ** help >>> Building/Updating help pages for package 'twilight' Formats: text html latex example exfdr text html latex expval text html latex plot.twilight text html latex example print.twilight text html latex example twilight text html latex example twilight.combi text html latex example twilight.filtering text html latex example twilight.getlambda text html latex twilight.getmatrix text html latex twilight.permute.pair text html latex twilight.permute.unpair text html latex twilight.pval text html latex example twilight.teststat text html latex example ** building package indices ... * DONE (twilight)