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Package 213/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
snapCGH1.5.0John MarioniLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | [ OK ] | OK | ||
churchill | Solaris 2.9 | sparc | OK | OK | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | OK |
Package: snapCGH |
Version: 1.5.0 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build snapCGH |
RetCode: 0 |
Time: 154.4 seconds |
Status: OK |
PackageFile: snapCGH_1.5.0.tar.gz |
* checking for file 'snapCGH/DESCRIPTION' ... OK * preparing 'snapCGH': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to re-build vignettes * Installing *source* package 'snapCGH' ... ** libs gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c optimizer.c -o optimizer.o gcc -std=gnu99 -shared -L/usr/local/lib -o snapCGH.so optimizer.o -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** preparing package for lazy loading Loading required package: limma Loading required package: tilingArray Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: RColorBrewer Loading required package: grid Loading required package: strucchange Loading required package: zoo Attaching package: 'zoo' The following object(s) are masked from package:base : rapply Loading required package: sandwich Loading required package: vsn Loading required package: genefilter Loading required package: survival Loading required package: splines Loading required package: geneplotter Loading required package: annotate Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: lattice KernSmooth 2.22 installed Copyright M. P. Wand 1997 Loading required package: pixmap Loading required package: DNAcopy Attaching package: 'DNAcopy' The following object(s) are masked from package:tilingArray : segment Loading required package: GLAD Loading required package: aws [1] "Have fun with GLAD" Loading required package: cluster Loading required package: aCGH Loading required package: multtest Loading required package: sma Attaching package: 'aCGH' The following object(s) are masked from package:stats : heatmap ** help >>> Building/Updating help pages for package 'snapCGH' Formats: text html latex example IDProbes text html latex LargeDataObject text html latex example SegList text html latex Viterbi.five text html latex Viterbi.four text html latex Viterbi.three text html latex Viterbi.two text html latex cbind text html latex chrominfo.Mb text html latex compareSegmentations text html latex convert.output text html latex example dim text html latex example dimnames text html latex filter text html latex find.param.five text html latex find.param.four text html latex find.param.one text html latex find.param.three text html latex find.param.two text html latex findBreakPoints text html latex fit.model text html latex genomePlot text html latex example heatmapGenome text html latex example imputeMissingValues text html latex log2ratios text html latex mergeStates text html latex non.zero.length.distr.non.tiled text html latex non.zero.length.distr.tiled text html latex nudSegmentation text html latex plotSegmentedGenome text html latex example processCGH text html latex read.clonesinfo text html latex readPositionalInfo text html latex removeByWeights text html latex runBioHMM text html latex runDNAcopy text html latex runGLAD text html latex runHMM text html latex runPicard text html latex sim.structure text html latex example subsetting text html latex example zero.length.distr.non.tiled text html latex zero.length.distr.tiled text html latex zoomChromosome text html latex zoomGenome text html latex ** building package indices ... * DONE (snapCGH) * creating vignettes ... OK * cleaning src * removing junk files * checking for LF line-endings in source files * checking for empty or unneeded directories * building 'snapCGH_1.5.0.tar.gz'