Back to the "Multiple platform build/check report"
Package 207/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
siggenes1.11.3Holger SchwenderLast Changed Date: 2007-05-16 09:29:34 -0700 Last Changed Rev: 24712 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | [ OK ] | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | OK | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | OK |
Package: siggenes |
Version: 1.11.3 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check siggenes_1.11.3.tar.gz |
RetCode: 0 |
Time: 70.5 seconds |
Status: OK |
CheckDir: siggenes.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/home/biocbuild/bbs-2.1-bioc/meat/siggenes.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-05-03 r41426) * checking for file 'siggenes/DESCRIPTION' ... OK * this is package 'siggenes' version '1.11.3' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'siggenes' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE filterALL: no visible global function definition for 'filterALL2' make.tablecode: no visible global function definition for 'cleancdfname' make.tablecode: no visible global function definition for 'getSYMBOL' make.tablecode: no visible global function definition for 'getLL' make.tablecode: no visible global function definition for 'getTDRows' make.tablecode: no visible global function definition for 'lookUp' make.tablecode: no visible global function definition for 'getTDRows' make.tablecode: no visible global function definition for 'lookUp' make.tablecode: no visible global function definition for 'getTDRows' make.tablecode: no visible global function definition for 'lookUp' make.tablecode: no visible global function definition for 'getTDRows' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating siggenes-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating siggenes-manual.tex ... OK * checking siggenes-manual.tex ... OK
siggenes.Rcheck/00install.out:
* Installing *source* package 'siggenes' ... ** R ** inst ** preparing package for lazy loading Loading required package: multtest Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: survival Loading required package: splines Creating a new generic function for "print" in "siggenes" Creating a new generic function for "identify" in "siggenes" ** help >>> Building/Updating help pages for package 'siggenes' Formats: text html latex example EBAM-class text html latex example FindA0-class text html latex SAM-class text html latex example cat.ebam text html latex cat.stat text html latex d.stat text html latex delta.plot text html latex example denspr text html latex ebam text html latex example find.a0 text html latex example fudge2 text html latex help.ebam text html latex example help.finda0 text html latex example help.sam text html latex example link.genes text html latex link.siggenes text html latex list.siggenes text html latex example pi0.est text html latex example plotArguments text html latex plotFindArguments text html latex qvalue.cal text html latex example rowWilcoxon text html latex sam text html latex example sam.plot2 text html latex example siggenes-internal text html latex siggenes2excel text html latex siggenes2html text html latex sumSAM-class text html latex wilc.ebam text html latex wilc.stat text html latex z.ebam text html latex ** building package indices ... * DONE (siggenes)