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Package 208/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
sigPathway1.5.0Weil LaiLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | OK | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | [ OK ] | OK |
Package: sigPathway |
Version: 1.5.0 |
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check sigPathway_1.5.0.tar.gz |
RetCode: 0 |
Time: 90.4 seconds |
Status: OK |
CheckDir: sigPathway.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/bbs-2.1-bioc/meat/sigPathway.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-04-17 r41210) * checking for file 'sigPathway/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'sigPathway' version '1.5.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'sigPathway' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... NOTE Note: found 1 marked Latin-1 string(s) Portable packages use only ASCII characters in their datasets. * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * creating sigPathway-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating sigPathway-manual.tex ... OK * checking sigPathway-manual.tex ... OK
sigPathway.Rcheck/00install.out:
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/sigPathway.Rcheck ---------- Making package sigPathway ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making calc_gene_set_internal.d from calc_gene_set_internal.c making calc_gene_set_stat.d from calc_gene_set_stat.c making calc_probe_stat.d from calc_probe_stat.c making calc_weights.d from calc_weights.c making matrix_fn.d from matrix_fn.c making permute.d from permute.c making shuffle.d from shuffle.c making sigPathway.d from sigPathway.c gcc -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c calc_gene_set_internal.c -o calc_gene_set_internal.o gcc -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c calc_gene_set_stat.c -o calc_gene_set_stat.o gcc -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c calc_probe_stat.c -o calc_probe_stat.o gcc -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c calc_weights.c -o calc_weights.o gcc -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c matrix_fn.c -o matrix_fn.o gcc -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c permute.c -o permute.o gcc -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c shuffle.c -o shuffle.o gcc -Id:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c sigPathway.c -o sigPathway.o windres -I d:/biocbld/bbs-2.1-bioc/R/include -i sigPathway_res.rc -o sigPathway_res.o gcc -shared -s -o sigPathway.dll sigPathway.def calc_gene_set_internal.o calc_gene_set_stat.o calc_probe_stat.o calc_weights.o matrix_fn.o permute.o shuffle.o sigPathway.o sigPathway_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -Ld:/biocbld/bbs-2.1-bioc/R/bin -lRlapack -Ld:/biocbld/bbs-2.1-bioc/R/bin -lRblas -lg2c -lR ... DLL made installing DLL installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'sigPathway' Formats: text html latex example chm MuscleExample text html latex chm calcTNullFast text html latex chm calcTStatFast text html latex example chm calculate.GSEA text html latex chm calculate.NGSk text html latex example chm calculatePathwayStatistics text html latex example chm estimateNumPerm text html latex example chm getPathwayStatistics.NGSk text html latex chm getPathwayStatistics text html latex chm rankPathways.NGSk text html latex chm rankPathways text html latex chm runSigPathway text html latex example chm selectGeneSets text html latex chm writeSigPathway text html latex chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\bbs-2.1-bioc\meat\sigPathway.Rcheck\00_pkg_src\sigPathway\chm\sigPathway.chm Compile time: 0 minutes, 0 seconds 15 Topics 33 Local links 10 Internet links 1 Graphic Created d:\biocbld\bbs-2.1-bioc\meat\sigPathway.Rcheck\00_pkg_src\sigPathway\chm\sigPathway.chm, 37,517 bytes Compression decreased file by 28,728 bytes. preparing package sigPathway for lazy loading adding MD5 sums * DONE (sigPathway)