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Package 214/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
SNPchip1.1.0Robert ScharpfLast Changed Date: 2007-05-11 21:56:41 -0700 Last Changed Rev: 24616 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | OK | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | [ OK ] | OK |
Package: SNPchip |
Version: 1.1.0 |
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check SNPchip_1.1.0.tar.gz |
RetCode: 0 |
Time: 169.4 seconds |
Status: OK |
CheckDir: SNPchip.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/bbs-2.1-bioc/meat/SNPchip.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-04-17 r41210) * checking for file 'SNPchip/DESCRIPTION' ... OK * this is package 'SNPchip' version '1.1.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'SNPchip' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating SNPchip-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating SNPchip-manual.tex ... OK * checking SNPchip-manual.tex ... OK
SNPchip.Rcheck/00install.out:
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/SNPchip.Rcheck ---------- Making package SNPchip ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'SNPchip' Formats: text html latex example chm AnnotatedSnpCallSet-class text html latex example chm AnnotatedSnpCopyNumberSet-class text html latex example chm AnnotatedSnpSet-class text html latex example chm addFeatureData-method text html latex chm alleleA text html latex example chm alleleB text html latex example chm annSnpset text html latex example chm centromere text html latex example chm chromosome text html latex chm chromosomeAnnotation text html latex example chm chromosomeSize text html latex example chm coerce-methods text html latex chm copyNumber text html latex chm cytoband text html latex example chm dbSnpId text html latex example chm enzyme text html latex example chm fData text html latex example chm fragmentLength text html latex example chm getSnpAnnotation text html latex example chm hapmap text html latex example chm initialize-methods text html latex chm plotCytoband text html latex example chm plotSnp text html latex example chm position text html latex chm show-methods text html latex chm showSummary text html latex example chm smoothSnp text html latex example chm summary-methods text html latex chm unsplitS4 text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\bbs-2.1-bioc\meat\SNPchip.Rcheck\00_pkg_src\SNPchip\chm\SNPchip.chm Compile time: 0 minutes, 0 seconds 30 Topics 138 Local links 1 Internet link 1 Graphic Created d:\biocbld\bbs-2.1-bioc\meat\SNPchip.Rcheck\00_pkg_src\SNPchip\chm\SNPchip.chm, 41,244 bytes Compression decreased file by 63,988 bytes. preparing package SNPchip for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: geneplotter Loading required package: annotate Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: lattice KernSmooth 2.22 installed Copyright M. P. Wand 1997 Loading required package: oligo Loading required package: affyio Loading required package: splines Loading required package: BufferedMatrix Loading required package: BufferedMatrixMethods This is the oligo package adding MD5 sums * DONE (SNPchip)