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Package 42/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
Category2.3.11S. FalconLast Changed Date: 2007-05-18 12:14:05 -0700 Last Changed Rev: 24812 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | [ OK ] | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | OK |
Package: Category |
Version: 2.3.11 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check Category_2.3.11.tar.gz |
RetCode: 0 |
Time: 442.9 seconds |
Status: OK |
CheckDir: Category.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/loc/biocbuild/bbs-2.1-bioc/meat/Category.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-04-17 r41210) * checking for file 'Category/DESCRIPTION' ... OK * this is package 'Category' version '2.3.11' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'Category' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating Category-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating Category-manual.tex ... OK * checking Category-manual.tex ... OK
Category.Rcheck/00install.out:
* Installing *source* package 'Category' ... ** R ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: graph Loading required package: KEGG Loading required package: GO Loading required package: annotate Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: genefilter Loading required package: survival Loading required package: splines ** help >>> Building/Updating help pages for package 'Category' Formats: text html latex example ChrMapHyperGParams-class text html latex example ChrMapHyperGResult-class text html latex example DatPkg-class text html latex example GOHyperGParams-class text html latex HyperGParams-class text html latex HyperGResult-accessors text html latex HyperGResult-class text html latex HyperGResultBase-class text html latex KEGGHyperGParams-class text html latex MAPAmat text html latex example applyByCategory text html latex example cateGOryMatrix text html latex example categoryToEntrezBuilder text html latex cb_contingency text html latex cb_parse_band_hsa text html latex example chrBandInciMat text html latex example findAMstats text html latex example geneGoHyperGeoTest text html latex geneKeggHyperGeoTest text html latex getPathNames text html latex example gseaperm text html latex hyperGTest text html latex makeChrBandGraph text html latex example makeEBcontr text html latex example makeValidParams text html latex probes2MAP text html latex example probes2Path text html latex example ttperm text html latex example universeBuilder text html latex ** building package indices ... * DONE (Category)