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Package 36/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
Biostrings2.5.4H. PagesLast Changed Date: 2007-05-15 20:21:01 -0700 Last Changed Rev: 24687 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
churchill | Solaris 2.9 | sparc | OK | WARNINGS | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | WARNINGS | [ OK ] |
Package: Biostrings |
Version: 2.5.4 |
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=Biostrings.buildbin-libdir Biostrings_2.5.4.tar.gz |
RetCode: 0 |
Time: 16.0 seconds |
Status: OK |
PackageFile: Biostrings_2.5.4.zip |
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/Biostrings.buildbin-libdir Using auto-selected zip options 'Biostrings-ZIPDATA=zip' ---------- Making package Biostrings ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making CharBuffer.d from CharBuffer.c making IntBuffer.d from IntBuffer.c making R_init_Biostrings.d from R_init_Biostrings.c making char_frequency.d from char_frequency.c making match_boyermoore.d from match_boyermoore.c making match_naive.d from match_naive.c making match_shiftor.d from match_shiftor.c making reverseComplement.d from reverseComplement.c making utils.d from utils.c gcc -ID:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c CharBuffer.c -o CharBuffer.o gcc -ID:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c IntBuffer.c -o IntBuffer.o gcc -ID:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c R_init_Biostrings.c -o R_init_Biostrings.o gcc -ID:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c char_frequency.c -o char_frequency.o gcc -ID:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c match_boyermoore.c -o match_boyermoore.o match_boyermoore.c: In function `match_boyermoore': match_boyermoore.c:370: warning: 'i1' might be used uninitialized in this function match_boyermoore.c:370: warning: 'i2' might be used uninitialized in this function match_boyermoore.c:370: warning: 'j1' might be used uninitialized in this function match_boyermoore.c:371: warning: 'c' might be used uninitialized in this function gcc -ID:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c match_naive.c -o match_naive.o gcc -ID:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c match_shiftor.c -o match_shiftor.o gcc -ID:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c reverseComplement.c -o reverseComplement.o gcc -ID:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c utils.c -o utils.o utils.c: In function `Biostrings_translate_charcpy_from_i1i2': utils.c:226: warning: 'lkup_val' might be used uninitialized in this function utils.c: In function `Biostrings_translate_charcpy_from_subset': utils.c:265: warning: 'lkup_val' might be used uninitialized in this function utils.c: In function `Biostrings_translate_charcpy_to_i1i2': utils.c:305: warning: 'lkup_val' might be used uninitialized in this function utils.c: In function `Biostrings_translate_charcpy_to_subset': utils.c:344: warning: 'lkup_val' might be used uninitialized in this function utils.c: In function `Biostrings_reverse_translate_charcpy_from_i1i2': utils.c:421: warning: 'lkup_val' might be used uninitialized in this function windres -I D:/biocbld/bbs-2.1-bioc/R/include -i Biostrings_res.rc -o Biostrings_res.o gcc -shared -s -o Biostrings.dll Biostrings.def CharBuffer.o IntBuffer.o R_init_Biostrings.o char_frequency.o match_boyermoore.o match_naive.o match_shiftor.o reverseComplement.o utils.o Biostrings_res.o -LD:/biocbld/bbs-2.1-bioc/R/bin -lR ... DLL made installing DLL installing R files installing inst files installing data files installing man source files installing indices zipping data installing help >>> Building/Updating help pages for package 'Biostrings' Formats: text html latex example chm AAString-class text html latex example chm AMINO_ACID_CODE text html latex example chm BString-class text html latex example chm BStringViews-class text html latex chm BStringViews-constructors text html latex example chm Biostrings-internals text html latex chm DNAString-class text html latex example chm GENETIC_CODE text html latex example chm IUPAC_CODE_MAP text html latex example chm RNAString-class text html latex example chm alphabetFrequency text html latex example chm blosum50 text html latex example chm gregexpr2 text html latex example chm matchPattern text html latex example chm matchProbePair text html latex example chm needwunsQS text html latex example chm readFASTA text html latex example chm reverseComplement text html latex example chm toComplex text html latex example chm yeastSEQCHR1 text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.4648\Biostrings\chm\Biostrings.chm Compile time: 0 minutes, 0 seconds 21 Topics 261 Local links 1 Internet link 1 Graphic Created d:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.4648\Biostrings\chm\Biostrings.chm, 41,037 bytes Compression decreased file by 67,631 bytes. preparing package Biostrings for lazy loading Creating a new generic function for "toString" in "Biostrings" Creating a new generic function for "nchar" in "Biostrings" Creating a new generic function for "as.matrix" in "Biostrings" Creating a new generic function for "as.list" in "Biostrings" Warning in matchSignature(signature, fdef, where) : in the method signature for function "BStringViews" no definition for class: "file" Warning in matchSignature(signature, fdef, where) : in the method signature for function "eq" no definition for class: "BioString" adding MD5 sums packaged installation of package 'Biostrings' as Biostrings_2.5.4.zip * DONE (Biostrings)