Package: pcaMethods

Version: 1.3.3

Command: E:\biocbld\2.0d\R\bin\R.exe CMD check pcaMethods_1.3.3.tar.gz

RetCode: 1

Time: 471.0 seconds

Status: ERROR

CheckDir: pcaMethods.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory 'E:/biocbld/2.0d/Rpacks/pcaMethods.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'pcaMethods/DESCRIPTION' ... OK
* this is package 'pcaMethods' version '1.3.3'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pcaMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating pcaMethods-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating pcaMethods-manual.tex ... OK
* checking pcaMethods-manual.tex ... ERROR
LaTeX errors when creating DVI version.
This typically indicates Rd problems.

installing R.css in E:/biocbld/2.0d/Rpacks/pcaMethods.Rcheck


---------- Making package pcaMethods ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'pcaMethods'
     Formats: text html latex example chm 
  Q2                                text    html    latex   example chm
  bpca                              text    html    latex   example chm
  checkData                         text    html    latex           chm
  class.pcaRes                      text    html    latex           chm
  kEstimate                         text    html    latex   example chm
  metaboliteData                    text    html    latex           chm
  metaboliteDataComplete            text    html    latex           chm
  nipalsPca                         text    html    latex   example chm
  pca                               text    html    latex   example chm
  plotPcs                           text    html    latex   example chm
  ppca                              text    html    latex   example chm
  prep                              text    html    latex   example chm
  slplot                            text    html    latex   example chm
  svdImpute                         text    html    latex   example chm
  svdPca                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\2.0d\Rpacks\pcaMethods.Rcheck\00_pkg_src\pcaMethods\chm\pcaMethods.chm


Compile time: 0 minutes, 0 seconds
16	Topics
68	Local links
2	Internet links
1	Graphic


Created e:\biocbld\2.0d\Rpacks\pcaMethods.Rcheck\00_pkg_src\pcaMethods\chm\pcaMethods.chm, 42,619 bytes
Compression decreased file by 23,735 bytes.
  preparing package pcaMethods for lazy loading
Loading required package: MASS
Loading required package: ellipse
Loading required package: pls

Attaching package: 'pls'


	The following object(s) are masked from package:stats :

	 loadings 

Creating a new generic function for "print" in "pcaMethods"
Creating a new generic function for "summary" in "pcaMethods"
Creating a new generic function for "screeplot" in "pcaMethods"
  adding MD5 sums

* DONE (pcaMethods)