CHECK report for affypdnn on liverpool

* checking for working latex ... OK * using log directory 'E:/biocbld/2.0d/Rpacks/affypdnn.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-12-05 r40126) * checking for file 'affypdnn/DESCRIPTION' ... OK * this is package 'affypdnn' version '1.9.2' * checking package dependencies ... WARNING 'library' or 'require' calls not declared from: tkWidgets See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking if this is a source package ... OK * checking whether package 'affypdnn' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating affypdnn-Ex.R ... OK * checking examples ... OK * creating affypdnn-manual.tex ... OK * checking affypdnn-manual.tex ... ERROR LaTeX errors when creating DVI version. This typically indicates Rd problems.

installing R.css in E:/biocbld/2.0d/Rpacks/affypdnn.Rcheck ---------- Making package affypdnn ------------ adding build stamp to DESCRIPTION installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'affypdnn' Formats: text html latex example chm chiptype.pdnn.params text html latex example chm expressopdnn text html latex example chm find.params.pdnn text html latex example chm generateExprVal.method.pdnn text html latex example chm matplotProbesPDNN text html latex example chm pdnn.params.chiptype text html latex example chm transform.ProbeSet text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\2.0d\Rpacks\affypdnn.Rcheck\00_pkg_src\affypdnn\chm\affypdnn.chm Compile time: 0 minutes, 0 seconds 8 Topics 31 Local links 0 Internet links 1 Graphic Created e:\biocbld\2.0d\Rpacks\affypdnn.Rcheck\00_pkg_src\affypdnn\chm\affypdnn.chm, 27,735 bytes Compression decreased file by 7,632 bytes. preparing package affypdnn for lazy loading Loading required package: affy Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()' or start with 'help(Biobase)'. For details on reading vignettes, see the openVignette help page. Loading required package: affyio Loading required package: affydata Loading required package: hgu95av2probe Loading required package: matchprobes adding MD5 sums * DONE (affypdnn)

Package 10/208	OS	Arch	BUILD	CHECK	BUILD BIN
affypdnn 1.9.2 Laurent	Linux (SUSE 9.2)	x86_64	OK	WARNINGS
	Linux (SUSE 10.1)	x86_64	OK	WARNINGS
	Linux (SUSE 9.2)	i686	OK	WARNINGS
	Solaris 2.9	sparc	OK	WARNINGS
	Windows Server 2003	x86_64	OK	WARNINGS	OK
	Windows Server 2003	NA	OK	[ ERROR ]	OK
	Mac OS X (10.4.6)	i686	OK	WARNINGS

affypdnn

1.9.2

Command output