Package: affycomp

Version: 1.11.0

Command: E:\biocbld\2.0d\R\bin\R.exe CMD check affycomp_1.11.0.tar.gz

RetCode: 1

Time: 143.9 seconds

Status: ERROR

CheckDir: affycomp.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory 'E:/biocbld/2.0d/Rpacks/affycomp.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'affycomp/DESCRIPTION' ... OK
* this is package 'affycomp' version '1.11.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affycomp' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating affycomp-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating affycomp-manual.tex ... OK
* checking affycomp-manual.tex ... ERROR
LaTeX errors when creating DVI version.
This typically indicates Rd problems.

installing R.css in E:/biocbld/2.0d/Rpacks/affycomp.Rcheck


---------- Making package affycomp ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'affycomp'
     Formats: text html latex example chm 
  SD                                text    html    latex   example chm
  affycomp.compfigs.auxiliary       text    html    latex   example chm
  affycomp.figures.auxiliary        text    html    latex   example chm
  affycomp.table                    text    html    latex   example chm
  affycompPlot                      text    html    latex   example chm
  assessAll                         text    html    latex           chm
  assessDilution                    text    html    latex           chm
  assessSD                          text    html    latex           chm
  assessSpikeIn                     text    html    latex           chm
  assessSpikeIn2                    text    html    latex           chm
  dilution.phenodata                text    html    latex           chm
  exprset.log                       text    html    latex           chm
  hgu133a.spikein.phenodata         text    html    latex           chm
  lw.sd.assessment                  text    html    latex           chm
  mas5.assessment                   text    html    latex           chm
  readin                            text    html    latex           chm
  remove.hgu133a.xhyb               text    html    latex           chm
  rma.assessment                    text    html    latex           chm
  rma.sd.assessment                 text    html    latex           chm
  spikein.phenodata                 text    html    latex           chm
  xhyb                              text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\2.0d\Rpacks\affycomp.Rcheck\00_pkg_src\affycomp\chm\affycomp.chm


Compile time: 0 minutes, 0 seconds
22	Topics
129	Local links
3	Internet links
1	Graphic


Created e:\biocbld\2.0d\Rpacks\affycomp.Rcheck\00_pkg_src\affycomp\chm\affycomp.chm, 34,503 bytes
Compression decreased file by 47,315 bytes.
  preparing package affycomp for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

  adding MD5 sums

* DONE (affycomp)