* checking for file 'GEOquery/DESCRIPTION' ... OK
* preparing 'GEOquery':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/2.0d/tmpdir/Rinst390886138
---------- Making package GEOquery ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'GEOquery'
Formats: text html latex example chm
GDS-class text html latex chm
GDS2MA text html latex example chm
GEOData-class text html latex chm
GEODataTable-class text html latex chm
GPL-class text html latex chm
GSE-class text html latex chm
GSM-class text html latex chm
dataTable text html latex chm
getGEO text html latex example chm
getGEOfile text html latex example chm
parseGEO text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\2.0d\Rpacks\GEOquery\chm\GEOquery.chm
Compile time: 0 minutes, 0 seconds
12 Topics
61 Local links
1 Internet link
1 Graphic
Created e:\biocbld\2.0d\Rpacks\GEOquery\chm\GEOquery.chm, 28,919 bytes
Compression decreased file by 11,240 bytes.
adding MD5 sums
* DONE (GEOquery)
* creating vignettes ... ERROR
trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/GDS/GDS1.soft.gz'
ftp data connection made, file length 162380 bytes
opened URL
downloaded 158Kb
trying URL 'http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?targ=self&acc=GSM3&form=text&view=full'
Content type 'geo/text' length unknown
opened URL
downloaded 213Kb
trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/by_series/GSE462/GSE462_family.soft.gz'
ftp data connection made, file length 550629 bytes
opened URL
downloaded 537Kb
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
trying URL 'http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?targ=self&acc=GPL5&form=text&view=full'
Content type 'geo/text' length unknown
opened URL
downloaded 418Kb
Loading required package: limma
entering extended mode
pdflatex.EXE: Windows API error 5: Access is denied.
texify: pdflatex failed for some reason (see log file).
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) :
running texi2dvi on 'GEOquery.tex' failed
In addition: There were 23 warnings (use warnings() to see them)
Execution halted