Back to the "Multiple platform build/check report"
| Package 27/208 | OS | Arch | BUILD | CHECK | BUILD BIN |
BeadExplorer1.1.3Gareth Elvidge | Linux (SUSE 9.2) | x86_64 | OK | WARNINGS | |
| Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | ||
| Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| Solaris 2.9 | sparc | OK | WARNINGS | ||
| Windows Server 2003 | x86_64 | OK | WARNINGS | OK | |
| Windows Server 2003 | NA | OK | [ TIMEOUT ] | OK | |
| Mac OS X (10.4.6) | i686 | OK | WARNINGS |
| Package: BeadExplorer |
| Version: 1.1.3 |
| Command: E:\biocbld\2.0d\R\bin\R.exe CMD check BeadExplorer_1.1.3.tar.gz |
| RetCode: None |
| Time: 2400.8 seconds |
| Status: TIMEOUT |
| CheckDir: BeadExplorer.Rcheck |
| Warnings: NA |
* checking for working latex ... OK * using log directory 'E:/biocbld/2.0d/Rpacks/BeadExplorer.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-12-05 r40126) * checking for file 'BeadExplorer/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'BeadExplorer' version '1.1.3' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'BeadExplorer' can be installed ... WARNING Found the following significant warnings: Warning: '\/' is an unrecognized escape in a character string Warning: unrecognized escape removed from "\/" See 'E:/biocbld/2.0d/Rpacks/BeadExplorer.Rcheck/00install.out' for details. * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... WARNING Warning: '\/' is an unrecognized escape in a character string Warning: unrecognized escape removed from "\/" * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented S4 methods: generic 'annotation<-' and siglist 'beadQC,ANY' All user-level objects in a package (including S4 classes and methods) should have documentation entries. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating BeadExplorer-Ex.R ... OK * checking examples ... OK * creating BeadExplorer-manual.tex ... OK * checking BeadExplorer-manual.tex ...
BeadExplorer.Rcheck/00install.out:
installing R.css in E:/biocbld/2.0d/Rpacks/BeadExplorer.Rcheck
---------- Making package BeadExplorer ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'BeadExplorer'
Formats: text html latex example chm
HumRef8 text html latex example chm
HumWG6 text html latex example chm
addManifest text html latex example chm
batchAnalysis text html latex example chm
beadAnalysis text html latex example chm
beadData-accessor text html latex chm
beadData-class text html latex example chm
beadQC-class text html latex example chm
boxplotArrays text html latex example chm
boxplotQC text html latex example chm
clusterplot text html latex example chm
cutoff text html latex example chm
detectionCalls text html latex example chm
dotplotArrays text html latex example chm
dotplotQC text html latex example chm
examplebeadData text html latex example chm
examplebeadQC text html latex example chm
extract text html latex example chm
filterData text html latex example chm
getAnnot text html latex example chm
getArrayStats text html latex example chm
getDet text html latex example chm
getExprs text html latex example chm
getID text html latex example chm
getQC text html latex example chm
getQC2 text html latex example chm
htmloutput text html latex example chm
multiDensity text html latex example chm
multiecdf text html latex example chm
normalise text html latex example chm
pc text html latex example chm
plotSamples text html latex example chm
readBead text html latex example chm
readManifest text html latex example chm
readQC text html latex example chm
scatterPlot text html latex example chm
write.beadData text html latex example chm
writeQC text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\2.0d\Rpacks\BeadExplorer.Rcheck\00_pkg_src\BeadExplorer\chm\BeadExplorer.chm
Compile time: 0 minutes, 0 seconds
39 Topics
188 Local links
0 Internet links
1 Graphic
Created e:\biocbld\2.0d\Rpacks\BeadExplorer.Rcheck\00_pkg_src\BeadExplorer\chm\BeadExplorer.chm, 47,927 bytes
Compression decreased file by 82,177 bytes.
preparing package BeadExplorer for lazy loading
Loading required package: widgetTools
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: affyio
Loading required package: R2HTML
Loading required package: tkWidgets
Loading required package: DynDoc
Warning: '\/' is an unrecognized escape in a character string
Warning: unrecognized escape removed from "\/"
adding MD5 sums
* DONE (BeadExplorer)