Back to the "Multiple platform build/check report"
| Package 36/208 | OS | Arch | BUILD | CHECK | BUILD BIN |
BSgenome1.3.7H. Pages | Linux (SUSE 9.2) | x86_64 | OK | OK | |
| Linux (SUSE 10.1) | x86_64 | OK | OK | ||
| Linux (SUSE 9.2) | i686 | OK | OK | ||
| Solaris 2.9 | sparc | OK | OK | ||
| Windows Server 2003 | x86_64 | OK | OK | OK | |
| Windows Server 2003 | NA | OK | [ ERROR ] | OK | |
| Mac OS X (10.4.6) | i686 | OK | ERROR |
| Package: BSgenome |
| Version: 1.3.7 |
| Command: E:\biocbld\2.0d\R\bin\R.exe CMD check BSgenome_1.3.7.tar.gz |
| RetCode: 1 |
| Time: 87.5 seconds |
| Status: ERROR |
| CheckDir: BSgenome.Rcheck |
| Warnings: NA |
* checking for working latex ... OK * using log directory 'E:/biocbld/2.0d/Rpacks/BSgenome.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-12-05 r40126) * checking for file 'BSgenome/DESCRIPTION' ... OK * this is package 'BSgenome' version '1.3.7' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'BSgenome' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating BSgenome-Ex.R ... OK * checking examples ... OK * creating BSgenome-manual.tex ... OK * checking BSgenome-manual.tex ... ERROR LaTeX errors when creating DVI version. This typically indicates Rd problems.
BSgenome.Rcheck/00install.out:
installing R.css in E:/biocbld/2.0d/Rpacks/BSgenome.Rcheck
---------- Making package BSgenome ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
save image
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: Biostrings
Creating a new generic function for "names" in "BSgenome"
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'BSgenome'
Formats: text html latex example chm
BSgenome-class text html latex example chm
available.genomes text html latex example chm
buildDataFiles text html latex example chm
getSeq text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\2.0d\Rpacks\BSgenome.Rcheck\00_pkg_src\BSgenome\chm\BSgenome.chm
Compile time: 0 minutes, 0 seconds
5 Topics
32 Local links
0 Internet links
1 Graphic
Created e:\biocbld\2.0d\Rpacks\BSgenome.Rcheck\00_pkg_src\BSgenome\chm\BSgenome.chm, 22,761 bytes
Compression decreased file by 2,049 bytes.
adding MD5 sums
* DONE (BSgenome)