Package: globaltest

Version: 4.5.1

Command: D:\biocbld\2.0d\R\bin\R.exe CMD build globaltest

RetCode: 1

Time: 153.0 seconds

Status: ERROR

PackageFile: None

* checking for file 'globaltest/DESCRIPTION' ... OK
* preparing 'globaltest':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/2.0d/tmpdir/Rinst491688543


---------- Making package globaltest ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  save image
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: survival
Loading required package: splines
Creating a new generic function for "fitted.values" in "globaltest"
Creating a new generic function for "residuals" in "globaltest"
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'globaltest'
     Formats: text html latex example chm 
  GOstructure                       text    html    latex           chm
  annotation.vandeVijver            text    html    latex           chm
  checkerboard                      text    html    latex   example chm
  geneplot                          text    html    latex   example chm
  globaltest                        text    html    latex   example chm
  gostructure.vandeVijver           text    html    latex           chm
  gt.barplot-class                  text    html    latex           chm
  gt.result-class                   text    html    latex           chm
  gtGO                              text    html    latex   example chm
  mlogit                            text    html    latex   example chm
  multtest                          text    html    latex   example chm
  permutations                      text    html    latex   example chm
  regressionplot                    text    html    latex   example chm
  sampleplot                        text    html    latex   example chm
  sampling                          text    html    latex   example chm
  vandeVijver                       text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\2.0d\Rpacks\globaltest\chm\globaltest.chm





Compile time: 0 minutes, 0 seconds

17	Topics

162	Local links

0	Internet links

1	Graphic





Created d:\biocbld\2.0d\Rpacks\globaltest\chm\globaltest.chm, 48,109 bytes

Compression decreased file by 44,475 bytes.

  preparing package globaltest for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: survival
Loading required package: splines
  adding MD5 sums

* DONE (globaltest)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: multtest
Loading required package: survival
Loading required package: splines
Loading required package: GO
Loading required package: graph
Loading required package: annotate
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Warning messages:
1: The exprSet class is deprecated, use ExpressionSet instead 
2: The exprSet class is deprecated, use ExpressionSet instead 
3: The exprSet class is deprecated, use ExpressionSet instead 
4: The exprSet class is deprecated, use ExpressionSet instead 
5: The exprSet class is deprecated, use ExpressionSet instead 
6: The exprSet class is deprecated, use ExpressionSet instead 
7: The exprSet class is deprecated, use ExpressionSet instead 
8: The exprSet class is deprecated, use ExpressionSet instead 
9: The exprSet class is deprecated, use ExpressionSet instead 
10: The exprSet class is deprecated, use ExpressionSet instead 

Error:  chunk 33 (label=visualizeGO) 
Error in library(Rgraphviz) : there is no package called 'Rgraphviz'
Error in buildVignettes(dir = ".") : Error:  chunk 33 (label=visualizeGO) 
Error in library(Rgraphviz) : there is no package called 'Rgraphviz'
Execution halted