Back to the "Multiple platform build/check report"
| Package 59/208 | OS | Arch | BUILD | CHECK | BUILD BIN |
externalVector1.5.1Biocore Team | Linux (SUSE 9.2) | x86_64 | OK | ERROR | |
| Linux (SUSE 10.1) | x86_64 | OK | ERROR | ||
| Linux (SUSE 9.2) | i686 | OK | ERROR | ||
| Solaris 2.9 | sparc | OK | ERROR | ||
| Windows Server 2003 | x86_64 | OK | [ ERROR ] | OK | |
| Windows Server 2003 | NA | OK | ERROR | OK | |
| Mac OS X (10.4.6) | i686 | OK | ERROR |
| Package: externalVector |
| Version: 1.5.1 |
| Command: D:\biocbld\2.0d\R\bin\R.exe CMD check externalVector_1.5.1.tar.gz |
| RetCode: 1 |
| Time: 95.5 seconds |
| Status: ERROR |
| CheckDir: externalVector.Rcheck |
| Warnings: NA |
* checking for working latex ... OK
* using log directory 'D:/biocbld/2.0d/Rpacks/externalVector.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'externalVector/DESCRIPTION' ... OK
* this is package 'externalVector' version '1.5.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'externalVector' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
all any max min prod range sum
Undocumented S4 methods:
generic '[<-' and siglist
'indirectExternalVector,missing,missing,ANY'
generic '[<-' and siglist 'indirectExternalVector,ANY,missing,ANY'
generic '[<-' and siglist
'indirectExternalMatrix,missing,missing,ANY'
generic '[<-' and siglist 'indirectExternalMatrix,ANY,ANY,ANY'
generic 'dimnames<-' and siglist 'indirectExternalVector,ANY'
generic 'dimnames<-' and siglist 'indirectExternalMatrix,ANY'
generic 'initializeResource' and siglist 'nativeStorageMethods,ANY'
generic 'initializeResource' and siglist 'externalStorage,ANY'
generic 'names<-' and siglist 'indirectExternalMatrix,ANY'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating externalVector-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'externalVector-Ex.R' failed.
The error most likely occurred in:
> ### * asEach
>
> flush(stderr()); flush(stdout())
>
> ### Name: asEach
> ### Title: Coerce each element of an external vector to a particular type
> ### Aliases: asEach asEach,ANY,character-method
> ### Keywords: classes
>
> ### ** Examples
>
> x <- externalCharacter(4)
Error in initializeResource(resource, ptr, size, type, ...) :
Trying to call virtual method for "initializeResource" with signature resource = "nativeStorageMethods"
Execution halted
externalVector.Rcheck/00install.out:
installing R.css in D:/biocbld/2.0d/Rpacks/externalVector.Rcheck
---------- Making package externalVector ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making allocator.d from allocator.c
making arraySummary.d from arraySummary.c
making coerce.d from coerce.c
making externalVector.d from externalVector.c
making groups.d from groups.c
making math.d from math.c
making slice.d from slice.c
making storage.d from storage.c
making subscript.d from subscript.c
gcc -Id:/biocbld/2.0d/R/include -Wall -O2 -std=gnu99 -c allocator.c -o allocator.o
gcc -Id:/biocbld/2.0d/R/include -Wall -O2 -std=gnu99 -c arraySummary.c -o arraySummary.o
gcc -Id:/biocbld/2.0d/R/include -Wall -O2 -std=gnu99 -c coerce.c -o coerce.o
gcc -Id:/biocbld/2.0d/R/include -Wall -O2 -std=gnu99 -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc -Id:/biocbld/2.0d/R/include -Wall -O2 -std=gnu99 -c groups.c -o groups.o
gcc -Id:/biocbld/2.0d/R/include -Wall -O2 -std=gnu99 -c math.c -o math.o
gcc -Id:/biocbld/2.0d/R/include -Wall -O2 -std=gnu99 -c slice.c -o slice.o
gcc -Id:/biocbld/2.0d/R/include -Wall -O2 -std=gnu99 -c storage.c -o storage.o
gcc -Id:/biocbld/2.0d/R/include -Wall -O2 -std=gnu99 -c subscript.c -o subscript.o
windres --include-dir d:/biocbld/2.0d/R/include -i externalVector_res.rc -o externalVector_res.o
gcc -shared -s -o externalVector.dll externalVector.def allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o externalVector_res.o -Ld:/biocbld/2.0d/R/bin -lR
... DLL made
installing DLL
installing R files
save image
Creating a new generic function for "names" in "externalVector"
Creating a new generic function for "names<-" in "externalVector"
Creating a new generic function for "match" in "externalVector"
Creating a new generic function for "as.vector" in "externalVector"
Creating a new generic function for "as.logical" in "externalVector"
Creating a new generic function for "as.numeric" in "externalVector"
Creating a new generic function for "as.double" in "externalVector"
Creating a new generic function for "as.single" in "externalVector"
Creating a new generic function for "as.complex" in "externalVector"
Creating a new generic function for "as.list" in "externalVector"
Creating a new generic function for "as.matrix" in "externalVector"
Creating a new generic function for "as.data.frame" in "externalVector"
Creating a new generic function for "log" in "externalVector"
Creating a new generic function for "apply" in "externalVector"
Creating a new generic function for "lapply" in "externalVector"
Creating a new generic function for "sapply" in "externalVector"
Creating a new generic function for "mean" in "externalVector"
Creating a new generic function for "median" in "externalVector"
Creating a new generic function for "cov2cor" in "externalVector"
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'externalVector'
Formats: text html latex example chm
NAIndex-class text html latex chm
SubscriptList text html latex example chm
Subset text html latex chm
allIndex-class text html latex chm
allNA text html latex example chm
allocators text html latex chm
as.Rvector text html latex example chm
asEach text html latex example chm
defaultElement text html latex example chm
exprMatrix-class text html latex chm
externalAllocator-class text html latex chm
externalMatrix text html latex example chm
externalResource-class text html latex chm
externalStorage-class text html latex chm
externalVector-class text html latex chm
externalVector text html latex example chm
externalVectorWithStorage-class text html latex chm
gcAllocator-class text html latex example chm
getExternalStorage text html latex chm
getNativeStorageMethods text html latex chm
indirectExternalMatrix-class text html latex chm
indirectExternalVector-class text html latex chm
internalType text html latex chm
makeSlice text html latex example chm
matrixIndex-class text html latex chm
nativeStorageMethods-class text html latex chm
nativeStorageMethodsList-class text html latex chm
nonSlotAttributes text html latex chm
noneIndex-class text html latex chm
positiveIndex-class text html latex chm
rebind text html latex chm
setDimNames text html latex chm
setExternalStorageClass text html latex example chm
setVirtualMethod text html latex example chm
simpleStorage-class text html latex chm
sliceIndex-class text html latex chm
union-class text html latex chm
var text html latex example chm
vectorIndex-class text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\2.0d\Rpacks\externalVector.Rcheck\00_pkg_src\externalVector\chm\externalVector.chm
Compile time: 0 minutes, 0 seconds
40 Topics
532 Local links
0 Internet links
1 Graphic
Created d:\biocbld\2.0d\Rpacks\externalVector.Rcheck\00_pkg_src\externalVector\chm\externalVector.chm, 83,299 bytes
Compression decreased file by 265,394 bytes.
adding MD5 sums
* DONE (externalVector)