* checking for file 'exprDB/DESCRIPTION' ... OK
* preparing 'exprDB':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/2.0d/tmpdir/Rinst578881008
---------- Making package exprDB ------------
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
adding build stamp to DESCRIPTION
making DLL ...
making exprdb.d from exprdb.c
making exprdb_apply.d from exprdb_apply.c
making exprdb_r.d from exprdb_r.c
making exprdb_select.d from exprdb_select.c
making express.d from express.c
making r_col.d from r_col.c
gcc -Id:/biocbld/2.0d/R/include -Wall -O2 -std=gnu99 -c exprdb.c -o exprdb.o
In file included from common.h:6,
from exprdb.c:1:
express.h:4:16: db.h: No such file or directory
In file included from common.h:6,
from exprdb.c:1:
express.h:27: error: syntax error before "u_int32_t"
express.h:27: warning: no semicolon at end of struct or union
express.h:39: error: syntax error before "u_int32_t"
express.h:39: warning: no semicolon at end of struct or union
express.h:40: warning: type defaults to `int' in declaration of `cache_b'
express.h:40: warning: data definition has no type or storage class
express.h:41: error: syntax error before '*' token
express.h:41: warning: type defaults to `int' in declaration of `dbenv'
express.h:41: warning: data definition has no type or storage class
express.h:42: error: syntax error before '*' token
express.h:42: warning: type defaults to `int' in declaration of `dbp'
express.h:42: warning: data definition has no type or storage class
express.h:46: error: syntax error before '*' token
express.h:46: warning: type defaults to `int' in declaration of `meta'
express.h:46: warning: data definition has no type or storage class
express.h:47: error: syntax error before "k_max_genes"
express.h:47: warning: type defaults to `int' in declaration of `k_max_genes'
express.h:47: warning: type defaults to `int' in declaration of `k_max_arrays'
express.h:47: warning: data definition has no type or storage class
express.h:52: error: syntax error before "d_max_genes"
express.h:52: warning: type defaults to `int' in declaration of `d_max_genes'
express.h:52: warning: type defaults to `int' in declaration of `d_max_arrays'
express.h:52: warning: data definition has no type or storage class
express.h:120: error: syntax error before "u_int32_t"
express.h:163: error: syntax error before '}' token
express.h:167: error: syntax error before "DBT"
express.h:167: warning: no semicolon at end of struct or union
express.h:169: error: syntax error before '*' token
express.h:169: warning: type defaults to `int' in declaration of `c'
express.h:169: warning: data definition has no type or storage class
express.h:170: error: conflicting types for 'get'
express.h:151: error: previous declaration of 'get' was here
express.h:171: error: conflicting types for 'close'
express.h:110: error: previous declaration of 'close' was here
express.h:172: error: syntax error before '}' token
express.h:174: error: syntax error before "DB_ENV"
In file included from common.h:7,
from exprdb.c:1:
r_col.h:8: error: syntax error before "DB"
r_col.h:8: warning: no semicolon at end of struct or union
r_col.h:9: warning: type defaults to `int' in declaration of `ndx'
r_col.h:9: warning: data definition has no type or storage class
r_col.h:10: error: syntax error before '}' token
r_col.h:10: warning: type defaults to `int' in declaration of `R_COL'
r_col.h:10: warning: data definition has no type or storage class
r_col.h:12: error: syntax error before '*' token
r_col.h:12: warning: type defaults to `int' in declaration of `rcol_assoc'
r_col.h:12: warning: data definition has no type or storage class
r_col.h:13: error: syntax error before '*' token
exprdb.c: In function `EDB_dims':
exprdb.c:18: error: dereferencing pointer to incomplete type
exprdb.c:19: error: dereferencing pointer to incomplete type
exprdb.c: In function `EDB_finalize':
exprdb.c:37: error: dereferencing pointer to incomplete type
exprdb.c: In function `EDB_create':
exprdb.c:46: error: dereferencing pointer to incomplete type
exprdb.c:47: error: dereferencing pointer to incomplete type
exprdb.c: At top level:
express.h:168: error: storage size of `key' isn't known
make[3]: *** [exprdb.o] Error 1
make[2]: *** [srcDynlib] Error 2
make[1]: *** [all] Error 2
make: *** [pkg-exprDB] Error 2
*** Installation of exprDB failed ***
Removing 'D:/biocbld/2.0d/tmpdir/Rinst578881008/exprDB'
ERROR
Installation failed.
Removing 'D:/biocbld/2.0d/tmpdir/Rinst578881008'