Package: simulatorAPMS

Version: 1.7.0

Command: /loc/biocbuild/2.0d/R/bin/R CMD build simulatorAPMS

RetCode: 1

Time: 17.6 seconds

Status: ERROR

PackageFile: None

* checking for file 'simulatorAPMS/DESCRIPTION' ... OK
* preparing 'simulatorAPMS':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'simulatorAPMS' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'simulatorAPMS'
     Formats: text html latex example 
  APComEX                           text    html    latex   example
  PPIEX                             text    html    latex   example
  TSNMatrix                         text    html    latex   example
  applyDeformationError             text    html    latex   example
  applyFNErrors                     text    html    latex   example
  applyFPErrors                     text    html    latex   example
  applyStickyError                  text    html    latex   example
  compIndep                         text    html    latex   example
  filteredProt                      text    html    latex   example
  fullSimEX                         text    html    latex   example
  missedProtEX                      text    html    latex   example
  missedProtHMSPCI                  text    html    latex   example
  recordSticky                      text    html    latex   example
  runAPComplex                      text    html    latex   example
  runCompIndep                      text    html    latex   example
  runSimEX                          text    html    latex   example
  runSimulators                     text    html    latex   example
  simEX                             text    html    latex   example
  simulator                         text    html    latex   example
  simulatorD                        text    html    latex   example
  simulatorS                        text    html    latex   example
  vBaits                            text    html    latex   example
  vBaitsEX                          text    html    latex   example
  vDeformEX                         text    html    latex   example
  vDeformed                         text    html    latex   example
  vDeformedEX                       text    html    latex   example
  vStickyEX                         text    html    latex   example
** building package indices ...
* DONE (simulatorAPMS)
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: apComplex
Loading required package: RBGL
Loading required package: Rgraphviz
Loading required package: geneplotter
Loading required package: annotate
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: lattice
Loading required package: ScISI
Loading required package: GO
Loading required package: GOstats
Loading required package: Category
Loading required package: KEGG
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: YEAST
Loading required package: xtable
Loading required package: ppiStats

Error:  chunk 5 (label=runapComplex) 
Error in colSums(errorComplex) : 'x' must be an array of at least two dimensions
Error in buildVignettes(dir = ".") : Error:  chunk 5 (label=runapComplex) 
Error in colSums(errorComplex) : 'x' must be an array of at least two dimensions
Execution halted