Package: geneplotter

Version: 1.13.5

Command: /loc/biocbuild/2.0d/R/bin/R CMD check geneplotter_1.13.5.tar.gz

RetCode: 0

Time: 158.7 seconds

Status: WARNINGS

CheckDir: geneplotter.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/loc/biocbuild/2.0d/Rpacks/geneplotter.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'geneplotter/DESCRIPTION' ... OK
* this is package 'geneplotter' version '1.13.5'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'geneplotter' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... WARNING
Warning: '\#' is an unrecognized escape in a character string
Warning: unrecognized escape removed from "\" USEMAP=\#"
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating geneplotter-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating geneplotter-manual.tex ... OK
* checking geneplotter-manual.tex ... OK

WARNING: There was 1 warning, see
  /loc/biocbuild/2.0d/Rpacks/geneplotter.Rcheck/00check.log
for details

* Installing *source* package 'geneplotter' ...
** R
** data
** inst
** save image
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Warning messages:
1: '\#' is an unrecognized escape in a character string 
2: unrecognized escape removed from "\" USEMAP=\#" 
** help
 >>> Building/Updating help pages for package 'geneplotter'
     Formats: text html latex example 
  GetColor                          text    html    latex   example
  Makesense                         text    html    latex   example
  alongChrom                        text    html    latex   example
  amplicon.plot                     text    html    latex   example
  cColor                            text    html    latex   example
  cPlot                             text    html    latex   example
  cScale                            text    html    latex   example
  classes                           text    html    latex
  eset133a                          text    html    latex   example
  histStack                         text    html    latex   example
  identifyLines                     text    html    latex   example
  imageMap                          text    html    latex   example
  make.chromOrd                     text    html    latex   example
  multiecdf                         text    html    latex   example
  openHtmlPage                      text    html    latex   example
  panel.smoothScatter               text    html    latex   example
  plotChr                           text    html    latex   example
  plotExpressionGraph               text    html    latex   example
  savepng                           text    html    latex   example
  smoothscatter                     text    html    latex   example
** building package indices ...
* DONE (geneplotter)