Package: arji

Version: 0.3.10

Command: /loc/biocbuild/2.0d/R/bin/R CMD check arji_0.3.10.tar.gz

RetCode: 0

Time: 51.8 seconds

Status: WARNINGS

CheckDir: arji.Rcheck

Warnings: 3

* checking for working latex ... OK
* using log directory '/loc/biocbuild/2.0d/Rpacks/arji.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'arji/DESCRIPTION' ... OK
* this is package 'arji' version '0.3.10'
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory 'arji/src' contains object files.
* checking whether package 'arji' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... WARNING
Error in eval(expr, envir, enclos) : could not find function "setClass"
Error: unable to load R code in package 'arji'
Execution halted

A namespace must be able to be loaded with just the base namespace loaded:
otherwise if the namespace gets loaded by a saved object, the session will
be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating arji-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... WARNING
In java, in demo.
INDOIT: In java, in demo, in doit().
INDOIT2B: In java, in demo, in doit2b().true,false,OK
INDOIT2: In java, in demo, in doit2().314,33,new arg
In java, in demo, in doit(). The field val is 55.15515
 The field array val[0] is 5
getClass result = class demo
in nonvirt323
output of toString for class demo [demo] class
intback: 5
INDOIT3: In java, in demo, in doit3().213.45,22.23,newth
IN BING.
In java, in demo.
INDOIT: In java, in demo, in doit().
INDOIT2B: In java, in demo, in doit2b().true,false,OK
INDOIT2: In java, in demo, in doit2().314,33,new arg
In java, in demo, in doit(). The field val is 55.15515
 The field array val[0] is 5
getClass result = class demo
in nonvirt323
output of toString for class demo [demo] class
intback: 5
LEAVING BING.
In java, in demo.
INDOIT: In java, in demo, in doit().
INDOIT2B: In java, in demo, in doit2b().true,false,OK
INDOIT2: In java, in demo, in doit2().314,33,new arg
In java, in demo, in doit(). The field val is 55.15515
 The field array val[0] is 5
getClass result = class demo
in nonvirt323
output of toString for class demo [demo] class
intback: 5
INDOIT3: In java, in demo, in doit3().213.45,22.23,newth
IN BING.
In java, in demo.
INDOIT: In java, in demo, in doit().
INDOIT2B: In java, in demo, in doit2b().true,false,OK
INDOIT2: In java, in demo, in doit2().314,33,new arg
In java, in demo, in doit(). The field val is 55.15515
 The field array val[0] is 5
getClass result = class demo
in nonvirt323
output of toString for class demo [demo] class
intback: 5
LEAVING BING.
* creating arji-manual.tex ... OK
* checking arji-manual.tex ... OK

WARNING: There were 3 warnings, see
  /loc/biocbuild/2.0d/Rpacks/arji.Rcheck/00check.log
for details

* Installing *source* package 'arji' ...
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - 
make: Nothing to be done for `all'.
** R
** inst
** help
 >>> Building/Updating help pages for package 'arji'
     Formats: text html latex example 
  JavaVMRef-class                   text    html    latex   example
  createJVM                         text    html    latex   example
  reflect                           text    html    latex   example
** building package indices ...
* DONE (arji)