* checking for file 'cosmo/DESCRIPTION' ... OK
* preparing 'cosmo':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
rm: src/*.o: No such file or directory
rm: src/*.so: No such file or directory
rm: Makevars: No such file or directory
* installing the package to re-build vignettes
* Installing *source* package 'cosmo' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c alloc.c -o alloc.o
/var/tmp//ccIXebJQ.s:1767:indirect jmp without `*'
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/var/tmp//ccIXebJQ.s:1797:indirect jmp without `*'
/var/tmp//ccIXebJQ.s:1812:indirect jmp without `*'
/var/tmp//ccIXebJQ.s:1827:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c back.c -o back.o
/var/tmp//ccQCGTw9.s:1136:indirect jmp without `*'
/var/tmp//ccQCGTw9.s:1151:indirect jmp without `*'
/var/tmp//ccQCGTw9.s:1166:indirect jmp without `*'
/var/tmp//ccQCGTw9.s:1181:indirect jmp without `*'
/var/tmp//ccQCGTw9.s:1200:indirect jmp without `*'
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/var/tmp//ccQCGTw9.s:1245:indirect jmp without `*'
/var/tmp//ccQCGTw9.s:1260:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c constraints.c -o constraints.o
/var/tmp//ccB2jECZ.s:7706:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:7721:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:7736:indirect jmp without `*'
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/var/tmp//ccB2jECZ.s:7800:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:7815:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:7830:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:7845:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:7860:indirect jmp without `*'
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/var/tmp//ccB2jECZ.s:7890:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:7905:indirect jmp without `*'
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/var/tmp//ccB2jECZ.s:7954:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:7969:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:7984:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:7999:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:8014:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:8029:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:8044:indirect jmp without `*'
/var/tmp//ccB2jECZ.s:8059:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c cosmo.c -o cosmo.o
/var/tmp//cc5mSzNs.s:1000:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1015:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1034:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1049:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1064:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1079:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1094:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1109:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1124:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1139:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1154:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1169:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1184:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1199:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1214:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1229:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1244:indirect jmp without `*'
/var/tmp//cc5mSzNs.s:1259:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c cregistration.c -o cregistration.o
/var/tmp//ccdYVcsM.s:133:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c donlp2.c -o donlp2.o
/var/tmp//cc6kGetR.s:43820:indirect jmp without `*'
/var/tmp//cc6kGetR.s:43902:indirect jmp without `*'
/var/tmp//cc6kGetR.s:43924:indirect jmp without `*'
/var/tmp//cc6kGetR.s:43946:indirect jmp without `*'
/var/tmp//cc6kGetR.s:43961:indirect jmp without `*'
/var/tmp//cc6kGetR.s:43986:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44023:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44066:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44142:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44176:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44240:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44265:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44287:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44333:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44388:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44443:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44468:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44483:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44505:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44520:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44578:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44593:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44612:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44627:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44646:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44680:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44762:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44787:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44821:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44885:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44907:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44944:indirect jmp without `*'
/var/tmp//cc6kGetR.s:44959:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c estarts.c -o estarts.o
/var/tmp//ccRkGvV0.s:6158:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6173:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6188:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6207:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6222:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6237:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6252:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6267:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6282:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6297:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6312:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6327:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6342:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6357:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6376:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6391:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6406:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6421:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6436:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6451:indirect jmp without `*'
/var/tmp//ccRkGvV0.s:6466:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c eval.c -o eval.o
/var/tmp//ccNzdmJ5.s:2832:indirect jmp without `*'
/var/tmp//ccNzdmJ5.s:2847:indirect jmp without `*'
/var/tmp//ccNzdmJ5.s:2862:indirect jmp without `*'
/var/tmp//ccNzdmJ5.s:2877:indirect jmp without `*'
/var/tmp//ccNzdmJ5.s:2892:indirect jmp without `*'
/var/tmp//ccNzdmJ5.s:2907:indirect jmp without `*'
/var/tmp//ccNzdmJ5.s:2922:indirect jmp without `*'
/var/tmp//ccNzdmJ5.s:2937:indirect jmp without `*'
/var/tmp//ccNzdmJ5.s:2952:indirect jmp without `*'
/var/tmp//ccNzdmJ5.s:2967:indirect jmp without `*'
/var/tmp//ccNzdmJ5.s:2982:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c fit.c -o fit.o
/var/tmp//ccsGPz3h.s:3484:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3499:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3518:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3533:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3548:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3563:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3578:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3593:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3608:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3623:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3638:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3653:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3672:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3687:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3702:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3717:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3732:indirect jmp without `*'
/var/tmp//ccsGPz3h.s:3747:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c free.c -o free.o
/var/tmp//cctdCDh4.s:1152:indirect jmp without `*'
/var/tmp//cctdCDh4.s:1167:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c init.c -o init.o
/var/tmp//ccOtwB0s.s:3348:indirect jmp without `*'
/var/tmp//ccOtwB0s.s:3363:indirect jmp without `*'
/var/tmp//ccOtwB0s.s:3382:indirect jmp without `*'
/var/tmp//ccOtwB0s.s:3397:indirect jmp without `*'
/var/tmp//ccOtwB0s.s:3412:indirect jmp without `*'
/var/tmp//ccOtwB0s.s:3427:indirect jmp without `*'
/var/tmp//ccOtwB0s.s:3442:indirect jmp without `*'
/var/tmp//ccOtwB0s.s:3457:indirect jmp without `*'
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/var/tmp//ccOtwB0s.s:3521:indirect jmp without `*'
/var/tmp//ccOtwB0s.s:3536:indirect jmp without `*'
/var/tmp//ccOtwB0s.s:3551:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c io.c -o io.o
/var/tmp//ccov3bqd.s:7888:indirect jmp without `*'
/var/tmp//ccov3bqd.s:7903:indirect jmp without `*'
/var/tmp//ccov3bqd.s:7918:indirect jmp without `*'
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/var/tmp//ccov3bqd.s:8350:indirect jmp without `*'
/var/tmp//ccov3bqd.s:8365:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c lstarts.c -o lstarts.o
/var/tmp//ccMXXgbx.s:2754:indirect jmp without `*'
/var/tmp//ccMXXgbx.s:2776:indirect jmp without `*'
/var/tmp//ccMXXgbx.s:2791:indirect jmp without `*'
/var/tmp//ccMXXgbx.s:2806:indirect jmp without `*'
/var/tmp//ccMXXgbx.s:2821:indirect jmp without `*'
/var/tmp//ccMXXgbx.s:2836:indirect jmp without `*'
/var/tmp//ccMXXgbx.s:2851:indirect jmp without `*'
/var/tmp//ccMXXgbx.s:2866:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c matLib.c -o matLib.o
/var/tmp//cc92l2C4.s:1398:indirect jmp without `*'
/var/tmp//cc92l2C4.s:1413:indirect jmp without `*'
/var/tmp//cc92l2C4.s:1428:indirect jmp without `*'
/var/tmp//cc92l2C4.s:1443:indirect jmp without `*'
/var/tmp//cc92l2C4.s:1458:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c newx.c -o newx.o
/var/tmp//cc5UamOF.s:106:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c optimize.c -o optimize.o
/var/tmp//ccWmsEKd.s:3846:indirect jmp without `*'
/var/tmp//ccWmsEKd.s:3883:indirect jmp without `*'
/var/tmp//ccWmsEKd.s:3905:indirect jmp without `*'
/var/tmp//ccWmsEKd.s:3924:indirect jmp without `*'
/var/tmp//ccWmsEKd.s:3939:indirect jmp without `*'
/var/tmp//ccWmsEKd.s:3970:indirect jmp without `*'
/var/tmp//ccWmsEKd.s:3995:indirect jmp without `*'
/var/tmp//ccWmsEKd.s:4023:indirect jmp without `*'
/var/tmp//ccWmsEKd.s:4048:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c posterior.c -o posterior.o
/var/tmp//cc7zL49I.s:2525:indirect jmp without `*'
/var/tmp//cc7zL49I.s:2540:indirect jmp without `*'
/var/tmp//cc7zL49I.s:2555:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c precalc.c -o precalc.o
/var/tmp//ccM1yAgf.s:1018:indirect jmp without `*'
/var/tmp//ccM1yAgf.s:1037:indirect jmp without `*'
/var/tmp//ccM1yAgf.s:1052:indirect jmp without `*'
/var/tmp//ccM1yAgf.s:1067:indirect jmp without `*'
/var/tmp//ccM1yAgf.s:1086:indirect jmp without `*'
/var/tmp//ccM1yAgf.s:1101:indirect jmp without `*'
/var/tmp//ccM1yAgf.s:1116:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c rio.c -o rio.o
/var/tmp//ccONnlGq.s:1498:indirect jmp without `*'
/var/tmp//ccONnlGq.s:1513:indirect jmp without `*'
/var/tmp//ccONnlGq.s:1528:indirect jmp without `*'
/var/tmp//ccONnlGq.s:1543:indirect jmp without `*'
/var/tmp//ccONnlGq.s:1558:indirect jmp without `*'
/var/tmp//ccONnlGq.s:1573:indirect jmp without `*'
/var/tmp//ccONnlGq.s:1588:indirect jmp without `*'
/var/tmp//ccONnlGq.s:1603:indirect jmp without `*'
/var/tmp//ccONnlGq.s:1618:indirect jmp without `*'
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/var/tmp//ccONnlGq.s:1712:indirect jmp without `*'
/var/tmp//ccONnlGq.s:1727:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c theta.c -o theta.o
/var/tmp//ccelr1nz.s:2815:indirect jmp without `*'
/var/tmp//ccelr1nz.s:2830:indirect jmp without `*'
/var/tmp//ccelr1nz.s:2845:indirect jmp without `*'
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/var/tmp//ccelr1nz.s:2969:indirect jmp without `*'
/var/tmp//ccelr1nz.s:2984:indirect jmp without `*'
/var/tmp//ccelr1nz.s:2999:indirect jmp without `*'
/var/tmp//ccelr1nz.s:3014:indirect jmp without `*'
/var/tmp//ccelr1nz.s:3029:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c user_eval.c -o user_eval.o
/var/tmp//ccSLKRxl.s:1171:indirect jmp without `*'
/var/tmp//ccSLKRxl.s:1190:indirect jmp without `*'
/var/tmp//ccSLKRxl.s:1224:indirect jmp without `*'
/var/tmp//ccSLKRxl.s:1249:indirect jmp without `*'
/var/tmp//ccSLKRxl.s:1274:indirect jmp without `*'
/var/tmp//ccSLKRxl.s:1299:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -IINCLUDE -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c xml.c -o xml.o
/var/tmp//ccxI6azp.s:3957:indirect jmp without `*'
/var/tmp//ccxI6azp.s:3972:indirect jmp without `*'
/var/tmp//ccxI6azp.s:3987:indirect jmp without `*'
/var/tmp//ccxI6azp.s:4002:indirect jmp without `*'
/var/tmp//ccxI6azp.s:4017:indirect jmp without `*'
/var/tmp//ccxI6azp.s:4032:indirect jmp without `*'
/var/tmp//ccxI6azp.s:4047:indirect jmp without `*'
/var/tmp//ccxI6azp.s:4062:indirect jmp without `*'
/var/tmp//ccxI6azp.s:4077:indirect jmp without `*'
/var/tmp//ccxI6azp.s:4092:indirect jmp without `*'
/var/tmp//ccxI6azp.s:4107:indirect jmp without `*'
/var/tmp//ccxI6azp.s:4122:indirect jmp without `*'
gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o cosmo.so alloc.o back.o constraints.o cosmo.o cregistration.o donlp2.o estarts.o eval.o fit.o free.o init.o io.o lstarts.o matLib.o newx.o optimize.o posterior.o precalc.o rio.o theta.o user_eval.o xml.o -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c alloc.c -o alloc.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c back.c -o back.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c constraints.c -o constraints.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c cosmo.c -o cosmo.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c cregistration.c -o cregistration.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c donlp2.c -o donlp2.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c estarts.c -o estarts.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c eval.c -o eval.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c fit.c -o fit.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c free.c -o free.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c init.c -o init.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c io.c -o io.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c lstarts.c -o lstarts.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c matLib.c -o matLib.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c newx.c -o newx.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c optimize.c -o optimize.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c posterior.c -o posterior.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c precalc.c -o precalc.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c rio.c -o rio.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c theta.c -o theta.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c user_eval.c -o user_eval.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -IINCLUDE -I/usr/local/include -fPIC -g -O2 -c xml.c -o xml.o
gcc-4.0 -arch ppc -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o cosmo.so alloc.o back.o constraints.o cosmo.o cregistration.o donlp2.o estarts.o eval.o fit.o free.o init.o io.o lstarts.o matLib.o newx.o optimize.o posterior.o precalc.o rio.o theta.o user_eval.o xml.o -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
** inst
** preparing package for lazy loading
Loading required package: grid
Loading required package: tkWidgets
Loading required package: widgetTools
Loading Tcl/Tk interface ... done
Loading required package: DynDoc
Creating a new generic function for "plot" in "cosmo"
Creating a new generic function for "print" in "cosmo"
** help
>>> Building/Updating help pages for package 'cosmo'
Formats: text html latex example
addCon text html latex example
align-class text html latex example
boundCon-class text html latex example
constraintBuilder text html latex example
constraintSet-class text html latex example
cosmo-class text html latex example
cosmo text html latex example
intInfo-class text html latex example
license.cosmo text html latex example
makeBoundCon text html latex example
makeConSet text html latex example
makePWM text html latex example
makePalCon text html latex example
makePosFreqCon text html latex example
makeShapeCon text html latex example
makeShapeDiffCon text html latex example
makeSubMotifCon text html latex example
motifPWM text html latex example
palCon-class text html latex example
posFreqCon-class text html latex example
postProbs-class text html latex example
pwm-class text html latex example
readConFile text html latex example
rseq text html latex example
seqLogo text html latex example
shapeCon-class text html latex example
shapeDiffCon-class text html latex example
simScore text html latex example
subMotifCon-class text html latex example
transMats text html latex example
writeConFile text html latex example
** building package indices ...
* DONE (cosmo)
* creating vignettes ... OK
* cleaning src
* running cleanup
rm: src/*.o: No such file or directory
rm: src/*.so: No such file or directory
rm: Makevars: No such file or directory
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'cosmo_1.0.4.tar.gz'