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Package 35/208OSArchBUILDCHECKBUILD BIN

bridge

1.7.0

Raphael Gottardo		Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 10.1) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Windows Server 2003 x86_64 OK  OK  OK 
Windows Server 2003 NA ERROR skippedskipped
Mac OS X (10.4.6) i686[ OK ] OK 
Package: bridge
Version: 1.7.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build bridge
RetCode: 0
Time: 45.6 seconds
Status: OK
PackageFile: bridge_1.7.0.tar.gz

Command output

* checking for file 'bridge/DESCRIPTION' ... OK
* preparing 'bridge':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'bridge' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c: In function 'up_date_w2':
bridge2.affy.c:300: warning: implicit declaration of function 'dirichlet'
/var/tmp//ccIZO4pi.s:2513:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2528:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2543:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2558:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2573:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2588:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2603:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2618:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2633:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2648:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2663:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2678:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2693:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2708:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2723:indirect jmp without `*'
/var/tmp//ccIZO4pi.s:2738:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c bridge2.c -o bridge2.o
/var/tmp//ccsZtcik.s:5242:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5257:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5272:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5287:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5302:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5317:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5332:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5347:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5362:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5377:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5392:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5407:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5422:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5437:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5452:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5467:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5482:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5497:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5512:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5527:indirect jmp without `*'
/var/tmp//ccsZtcik.s:5542:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c bridge2_util.c -o bridge2_util.o
bridge2_util.c: In function 'qr_solve':
bridge2_util.c:570: warning: implicit declaration of function 'dqrdc2_'
bridge2_util.c:585: warning: implicit declaration of function 'dqrcf_'
/var/tmp//cc4ffsWd.s:3765:indirect jmp without `*'
/var/tmp//cc4ffsWd.s:3780:indirect jmp without `*'
/var/tmp//cc4ffsWd.s:3795:indirect jmp without `*'
/var/tmp//cc4ffsWd.s:3810:indirect jmp without `*'
/var/tmp//cc4ffsWd.s:3825:indirect jmp without `*'
/var/tmp//cc4ffsWd.s:3840:indirect jmp without `*'
/var/tmp//cc4ffsWd.s:3855:indirect jmp without `*'
/var/tmp//cc4ffsWd.s:3870:indirect jmp without `*'
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/var/tmp//cc4ffsWd.s:3900:indirect jmp without `*'
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/var/tmp//cc4ffsWd.s:3930:indirect jmp without `*'
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/var/tmp//cc4ffsWd.s:3975:indirect jmp without `*'
/var/tmp//cc4ffsWd.s:3990:indirect jmp without `*'
/var/tmp//cc4ffsWd.s:4005:indirect jmp without `*'
/var/tmp//cc4ffsWd.s:4020:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c bridge3.c -o bridge3.o
/var/tmp//ccxQiiz3.s:3644:indirect jmp without `*'
/var/tmp//ccxQiiz3.s:3659:indirect jmp without `*'
/var/tmp//ccxQiiz3.s:3674:indirect jmp without `*'
/var/tmp//ccxQiiz3.s:3689:indirect jmp without `*'
/var/tmp//ccxQiiz3.s:3704:indirect jmp without `*'
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/var/tmp//ccxQiiz3.s:3854:indirect jmp without `*'
gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bridge.so bridge2.affy.o bridge2.o bridge2_util.o bridge3.o   -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c: In function 'up_date_w2':
bridge2.affy.c:300: warning: implicit declaration of function 'dirichlet'
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c bridge2.c -o bridge2.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c bridge2_util.c -o bridge2_util.o
bridge2_util.c: In function 'qr_solve':
bridge2_util.c:570: warning: implicit declaration of function 'dqrdc2_'
bridge2_util.c:585: warning: implicit declaration of function 'dqrcf_'
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c bridge3.c -o bridge3.o
gcc-4.0 -arch ppc -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bridge.so bridge2.affy.o bridge2.o bridge2_util.o bridge3.o   -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'bridge'
     Formats: text html latex example 
  bridge.2samples                   text    html    latex   example
  bridge.3samples                   text    html    latex   example
  hiv                               text    html    latex
** building package indices ...
* DONE (bridge)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'bridge_1.7.0.tar.gz'