Back to the "Multiple platform build/check report"
| Package 8/208 | OS | Arch | BUILD | CHECK | BUILD BIN |
affyio1.3.1Benjamin Milo Bolstad | Linux (SUSE 9.2) | x86_64 | OK | OK | |
| Linux (SUSE 10.1) | x86_64 | OK | OK | ||
| Linux (SUSE 9.2) | i686 | OK | OK | ||
| Solaris 2.9 | sparc | OK | OK | ||
| Windows Server 2003 | x86_64 | OK | OK | OK | |
| Windows Server 2003 | NA | OK | ERROR | OK | |
| Mac OS X (10.4.6) | i686 | OK | [ OK ] |
| Package: affyio |
| Version: 1.3.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check affyio_1.3.1.tar.gz |
| RetCode: 0 |
| Time: 30.7 seconds |
| Status: OK |
| CheckDir: affyio.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory '/Users/biocbuild/2.0d/Rpacks/affyio.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-10-21 r39702) * checking for file 'affyio/DESCRIPTION' ... OK * this is package 'affyio' version '1.3.1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'affyio' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * creating affyio-Ex.R ... OK * checking examples ... OK * creating affyio-manual.tex ... OK * checking affyio-manual.tex ... OK
affyio.Rcheck/00install.out:
* Installing *source* package 'affyio' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c read_abatch.c -o read_abatch.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c read_bpmap.c -o read_bpmap.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c read_cdf_xda.c -o read_cdf_xda.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c read_cdffile2.c -o read_cdffile2.o
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gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o affyio.so read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o -lz -F/Library/Frameworks/R.framework/.. -framework R
** R
** save image
** help
>>> Building/Updating help pages for package 'affyio'
Formats: text html latex example
check.cdf.type text html latex
read.cdffile.list text html latex
read.celfile text html latex
read.celfile.header text html latex
read.celfile.probeintensity.matri text html latex
** building package indices ...
* DONE (affyio)