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Package 172/208OSArchBUILDCHECKBUILD BIN

RPostgreSQL

0.0.0

H. Pages		Linux (SUSE 9.2) x86_64 OK  ERROR 
Linux (SUSE 10.1) x86_64 OK  ERROR 
Linux (SUSE 9.2) i686 OK  ERROR 
Solaris 2.9 sparc OK [ ERROR ]
Windows Server 2003 x86_64 OK  ERROR  ERROR 
Windows Server 2003 NA OK  ERROR  ERROR 
Mac OS X (10.4.6) i686 OK  ERROR 
Package: RPostgreSQL
Version: 0.0.0
Command: /loc/biocbuild/2.0d/R/bin/R CMD check RPostgreSQL_0.0.0.tar.gz
RetCode: 1
Time: 12.2 seconds
Status: ERROR
CheckDir: RPostgreSQL.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory '/loc/biocbuild/2.0d/Rpacks/RPostgreSQL.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'RPostgreSQL/DESCRIPTION' ... OK
* this is package 'RPostgreSQL' version '0.0.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RPostgreSQL' can be installed ... ERROR
Installation failed.
See '/loc/biocbuild/2.0d/Rpacks/RPostgreSQL.Rcheck/00install.out' for details.

RPostgreSQL.Rcheck/00install.out:

* Installing *source* package 'RPostgreSQL' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for compress in -lz... yes
checking for getopt_long in -lc... no
checking for mysql_init in -lmysqlclient... no
checking for mysql.h... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no

Configuration error:
  could not find the MySQL installation include and/or library
  directories.  Manually specify the location of the MySQL
  libraries and the header files and re-run R CMD INSTALL.

INSTRUCTIONS:

1. Define and export the 2 shell variables PKG_CPPFLAGS and
   PKG_LIBS to include the directory for header files (*.h)
   and libraries, for example (using Bourne shell syntax):

      export PKG_CPPFLAGS="-I"
      export PKG_LIBS="-L -lmysqlclient"

   Re-run the R INSTALL command:

      R CMD INSTALL RMySQL_.tar.gz

2. Alternatively, you may pass the configure arguments
      --with-mysql-dir= (distribution directory)
   or
      --with-mysql-inc= (where MySQL header files reside)
      --with-mysql-lib= (where MySQL libraries reside)
   in the call to R INSTALL --configure-args='...' 

   R CMD INSTALL --configure-args='--with-mysql-dir=DIR' RMySQL_.tar.gz

ERROR: configuration failed for package 'RPostgreSQL'
** Removing '/loc/biocbuild/2.0d/Rpacks/RPostgreSQL.Rcheck/RPostgreSQL'