Package: DynDoc

Version: 1.13.1

Command: /loc/biocbuild/2.0d/R/bin/R CMD check DynDoc_1.13.1.tar.gz

RetCode: 1

Time: 65.9 seconds

Status: ERROR

CheckDir: DynDoc.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory '/loc/biocbuild/2.0d/Rpacks/DynDoc.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'DynDoc/DESCRIPTION' ... OK
* this is package 'DynDoc' version '1.13.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DynDoc' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... WARNING
Warning: '\/' is an unrecognized escape in a character string
Warning: '\/' is an unrecognized escape in a character string
Warning: unrecognized escapes removed from "\/\/"
Warning: '\/' is an unrecognized escape in a character string
Warning: unrecognized escape removed from "\/"
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating DynDoc-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'DynDoc-Ex.R' failed.
The error most likely occurred in:

> ### * codeChunk-class
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: codeChunk-class
> ### Title: Class "codeChunk"
> ### Aliases: codeChunk-class codeChunk chunk<- chunk chunkName
> ###   chunk<-,codeChunk-method chunk,codeChunk-method
> ###   chunkName,codeChunk-method evalChunk,codeChunk-method
> ###   getOptions,codeChunk-method show,codeChunk-method
> ###   SweaveOptions,codeChunk-method
> ### Keywords: classes
> 
> ### ** Examples
> 
>     require("utils")
[1] TRUE
>     testfile <- system.file("Sweave", "Sweave-test-1.Rnw", package="utils")
>     z <- Stangle(testfile,driver=tangleToR)
>     getChunk(z,1)
Code chunk  :
 1:10 
Options: Error in cat(list(...), file, sep, fill, labels, append) : 
	argument 2 (type 'S4') cannot be handled by 'cat'
Execution halted

* Installing *source* package 'DynDoc' ...
** R
** save image
Creating a new generic function for "summary" in "DynDoc"
Warning messages:
1: '\/' is an unrecognized escape in a character string 
2: '\/' is an unrecognized escape in a character string 
3: unrecognized escapes removed from "\/\/" 
4: '\/' is an unrecognized escape in a character string 
5: unrecognized escape removed from "\/" 
6: undefined slot classes in definition of "Vignette": vigPkgVersion(class "VersionNumber") in: .completeClassSlots(ClassDef, where) 
** help
 >>> Building/Updating help pages for package 'DynDoc'
     Formats: text html latex example 
  DynDoc-class                      text    html    latex
  SweaveOptions-class               text    html    latex
  Vignette-class                    text    html    latex
  chunkList-class                   text    html    latex   example
  codeChunk-class                   text    html    latex   example
  getPkgVigList                     text    html    latex   example
  getVignette                       text    html    latex
  getVignetteCode                   text    html    latex
  getVignetteHeader                 text    html    latex
  tangleToR                         text    html    latex   example
  vignetteCode-class                text    html    latex
** building package indices ...
* DONE (DynDoc)