Package: sscore

Version: 1.6.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check sscore_1.6.0.tar.gz

RetCode: 0

Time: 105.4 seconds

Status: OK

CheckDir: sscore.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/1.9d/Rpacks/sscore.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'sscore/DESCRIPTION' ... OK
* this is package 'sscore' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'sscore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating sscore-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating sscore-manual.tex ... OK
* checking sscore-manual.tex ... OK

* Installing *source* package 'sscore' ...
** R
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio
Loading required package: affxparser
** help
 >>> Building/Updating help pages for package 'sscore'
     Formats: text html latex example 
  OneStepBiweightAlgorithm          text    html    latex
  SScore                            text    html    latex   example
  SScoreBatch                       text    html    latex   example
  computeAffxRawQ                   text    html    latex
  computeAffxSFandSDT               text    html    latex   example
  computeOutlier                    text    html    latex   example
  computeRawQ                       text    html    latex
  computeSFandSDT                   text    html    latex   example
  computeZoneIInfo                  text    html    latex
  computeZonenoise                  text    html    latex
  trimMean                          text    html    latex
** building package indices ...
* DONE (sscore)