Package: cghMCR

Version: 1.4.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check cghMCR_1.4.0.tar.gz

RetCode: 0

Time: 236.9 seconds

Status: OK

CheckDir: cghMCR.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/1.9d/Rpacks/cghMCR.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'cghMCR/DESCRIPTION' ... OK
* this is package 'cghMCR' version '1.4.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cghMCR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating cghMCR-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating cghMCR-manual.tex ... OK
* checking cghMCR-manual.tex ... OK

* Installing *source* package 'cghMCR' ...
** R
** data
** inst
** save image
Loading required package: DNAcopy
Loading required package: marray
Loading required package: limma
Loading required package: arrayQuality
Loading required package: convert
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: hexbin
Loading required package: grid
Loading required package: lattice
Loading required package: colorspace
Creating a new generic function for "plot" in "colorspace"

Attaching package: 'colorspace'


	The following object(s) are masked from package:grDevices :

	 hcl 

Loading required package: gridBase
Loading required package: RColorBrewer
Creating a new generic function for "print" in "cghMCR"
** help
 >>> Building/Updating help pages for package 'cghMCR'
     Formats: text html latex example 
  cghMCR-class                      text    html    latex   example
  cghMCR                            text    html    latex   example
  mergeMCRProbes                    text    html    latex   example
  plot.DNAcopy                      text    html    latex   example
** building package indices ...
* DONE (cghMCR)