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apComplex

1.8.0

Denise Scholtens		Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK [ OK ]
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 OK  OK 
Windows Server 2003 x86_64 OK  OK  OK 
Package: apComplex
Version: 1.8.0
Command: /loc/biocbuild/1.9d/R/bin/R CMD check apComplex_1.8.0.tar.gz
RetCode: 0
Time: 101.8 seconds
Status: OK
CheckDir: apComplex.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/1.9d/Rpacks/apComplex.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'apComplex/DESCRIPTION' ... OK
* this is package 'apComplex' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'apComplex' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating apComplex-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating apComplex-manual.tex ... OK
* checking apComplex-manual.tex ... OK

apComplex.Rcheck/00install.out:

* Installing *source* package 'apComplex' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'apComplex'
     Formats: text html latex example 
  HMSPCI                            text    html    latex   example
  Krogan                            text    html    latex   example
  LCdelta                           text    html    latex   example
  MBMEcHMSPCI                       text    html    latex   example
  MBMEcKrogan                       text    html    latex   example
  MBMEcTAP                          text    html    latex   example
  TAP                               text    html    latex   example
  apEX                              text    html    latex   example
  bhmaxSubgraph                     text    html    latex   example
  findComplexes                     text    html    latex   example
  gavinBP2006                       text    html    latex   example
  kroganBPMat2006                   text    html    latex   example
  mergeComplexes                    text    html    latex   example
  reduceMat                         text    html    latex   example
  sortComplexes                     text    html    latex   example
  vecInMat                          text    html    latex   example
  yNameTAP                          text    html    latex   example
  yTAP                              text    html    latex   example
** building package indices ...
* DONE (apComplex)