Package: arrayQuality

Version: 1.10.0

Command: D:\biocbld\1.9d\R\bin\R.exe CMD check arrayQuality_1.10.0.tar.gz

RetCode: 0

Time: 83.5 seconds

Status: OK

CheckDir: arrayQuality.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.9d/Rpacks/arrayQuality.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'arrayQuality/DESCRIPTION' ... OK
* this is package 'arrayQuality' version '1.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'arrayQuality' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating arrayQuality-Ex.R ... OK
* checking examples ... OK
* creating arrayQuality-manual.tex ... OK
* checking arrayQuality-manual.tex ... OK

installing R.css in D:/biocbld/1.9d/Rpacks/arrayQuality.Rcheck


---------- Making package arrayQuality ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'arrayQuality'
     Formats: text html latex example chm 
  MEEBO                             text    html    latex           chm
  MmDEGenes                         text    html    latex           chm
  PRv9mers                          text    html    latex   example chm
  PRvQCHyb                          text    html    latex   example chm
  agQuality                         text    html    latex   example chm
  arrayQuality-internal             text    html    latex           chm
  globalQuality                     text    html    latex   example chm
  gpQuality                         text    html    latex   example chm
  gprDB                             text    html    latex           chm
  maQualityPlots                    text    html    latex   example chm
  meeboQuality                      text    html    latex   example chm
  meeboQualityPlots                 text    html    latex   example chm
  prdata                            text    html    latex           chm
  qualBoxplot                       text    html    latex   example chm
  qualityScore                      text    html    latex           chm
  readAgilent                       text    html    latex   example chm
  readGPR                           text    html    latex   example chm
  readSpikeTypes                    text    html    latex   example chm
  readSpot                          text    html    latex   example chm
  readcontrolCode                   text    html    latex           chm
  scaleRefTable                     text    html    latex           chm
  slideQuality                      text    html    latex   example chm
  spotQuality                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.9d\Rpacks\arrayQuality.Rcheck\00_pkg_src\arrayQuality\chm\arrayQuality.chm


Compile time: 0 minutes, 0 seconds
24	Topics
129	Local links
0	Internet links
1	Graphic


Created d:\biocbld\1.9d\Rpacks\arrayQuality.Rcheck\00_pkg_src\arrayQuality\chm\arrayQuality.chm, 42,857 bytes
Compression decreased file by 50,368 bytes.
  preparing package arrayQuality for lazy loading
Loading required package: marray
Loading required package: limma
Loading required package: convert
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: hexbin
Loading required package: grid
Loading required package: lattice
Loading required package: colorspace
Creating a new generic function for "plot" in "colorspace"

Attaching package: 'colorspace'


	The following object(s) are masked from package:grDevices :

	 hcl 

Loading required package: gridBase
Loading required package: RColorBrewer
  adding MD5 sums

* DONE (arrayQuality)