* checking for file 'RBGL/DESCRIPTION' ... OK
* preparing 'RBGL':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
removing exploded boost header source...
* installing the package to re-build vignettes
* Installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c bbc.cpp -o bbc.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c cliques.cpp -o cliques.o
cliques.cpp: In function `void print_one_clique(oneCliqueType&)':
cliques.cpp:110: warning: comparison between signed and unsigned integer
expressions
cliques.cpp: In function `void print_all_cliques(allCliquesType&, char*)':
cliques.cpp:118: warning: comparison between signed and unsigned integer
expressions
cliques.cpp: In function `void extend_v2(Graph_ud&, std::vector >&, std::vector >&, int, int,
int&, allCliquesType&)':
cliques.cpp:138: warning: `int fixp' might be used uninitialized in this
function
cliques.cpp:139: warning: `int pos' might be used uninitialized in this
function
cliques.cpp:139: warning: `int s' might be used uninitialized in this function
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c clusteringCoef.cpp -o clusteringCoef.o
clusteringCoef.cpp: In function `int findIndex(int, const std::vector >&)':
clusteringCoef.cpp:132: warning: comparison between signed and unsigned integer
expressions
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c hcs.cpp -o hcs.o
hcs.cpp: In function `void output_graph_labels(const V_Label&, const char*)':
hcs.cpp:27: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `void build_subgraph(Cluster&, const Graph_ud&, const
V_Label&, Graph_ud&, V_Label&)':
hcs.cpp:62: warning: comparison between signed and unsigned integer expressions
hcs.cpp: In function `void remove_vertices(int, const Graph_ud&, const
V_Label&, Graph_ud&, V_Label&)':
hcs.cpp:117: warning: comparison between signed and unsigned integer
expressions
hcs.cpp: In function `dst cluster_distance(const Graph_ud&, V_Label&, int,
V_Label&)':
hcs.cpp:134: warning: comparison between signed and unsigned integer
expressions
hcs.cpp:138: warning: comparison between signed and unsigned integer
expressions
hcs.cpp: In function `void adopt_singleton(const Graph_ud&, V_Label&,
ClusterResult&)':
hcs.cpp:206: warning: comparison between signed and unsigned integer
expressions
hcs.cpp: In function `void remove_clusters(ClusterResult&, const Graph_ud&,
const V_Label&, Graph_ud&, V_Label&)':
hcs.cpp:248: warning: comparison between signed and unsigned integer
expressions
hcs.cpp: In function `void HCS_internal(const Graph_ud&, V_Label&,
ClusterResult&)':
hcs.cpp:288: warning: comparison between signed and unsigned integer
expressions
hcs.cpp: In function `SEXPREC* HCS_loop(Graph_ud&, V_Label&)':
hcs.cpp:363: warning: comparison between signed and unsigned integer
expressions
hcs.cpp:393: warning: comparison between signed and unsigned integer
expressions
hcs.cpp:397: warning: comparison between signed and unsigned integer
expressions
hcs.cpp:353: warning: unused variable `bool found_new_cluster'
boostIncl/boost/graph/edge_connectivity.hpp: In function `std::pair::vertex_descriptor, typename
boost::graph_traits::degree_size_type>
boost::detail::min_degree_vertex(Graph&) [with Graph = const
R_adjacency_list]':
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: `size_t p' might be
used uninitialized in this function
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c incrConnComp.cpp -o incrConnComp.o
incrConnComp.cpp: In function `SEXPREC* BGL_incr_comp_internal(SEXPREC*,
SEXPREC*, SEXPREC*, E_IC_METHOD)':
incrConnComp.cpp:67: warning: comparison between signed and unsigned integer
expressions
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c interfaces.cpp -o interfaces.o
interfaces.cpp: In function `SEXPREC* BGL_articulation_points_U(SEXPREC*,
SEXPREC*, SEXPREC*, SEXPREC*)':
interfaces.cpp:310: warning: comparison between signed and unsigned integer
expressions
boostIncl/boost/graph/edge_connectivity.hpp: In function `std::pair::vertex_descriptor, typename
boost::graph_traits::degree_size_type>
boost::detail::min_degree_vertex(Graph&) [with Graph =
R_adjacency_list]':
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: `size_t p' might be
used uninitialized in this function
interfaces.cpp: In function `SEXPREC* BGL_astar_search_D(SEXPREC*, SEXPREC*,
SEXPREC*)':
interfaces.cpp:404: warning: `SEXPREC*ansList' might be used uninitialized in
this function
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c layout.cpp -o layout.o
layout.cpp: In function `SEXPREC* BGL_gursov_atun_layout(SEXPREC*, SEXPREC*,
SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
layout.cpp:219: warning: unused variable `double w'
layout.cpp:220: warning: unused variable `double h'
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c mincut.cpp -o mincut.o
boostIncl/boost/graph/edge_connectivity.hpp: In function `std::pair::vertex_descriptor, typename
boost::graph_traits::degree_size_type>
boost::detail::min_degree_vertex(Graph&) [with Graph =
R_adjacency_list]':
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: `size_t p' might be
used uninitialized in this function
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c minST.cpp -o minST.o
minST.cpp: In function `SEXPREC* BGL_PRIM_U(SEXPREC*, SEXPREC*, SEXPREC*,
SEXPREC*)':
minST.cpp:99: warning: comparison between signed and unsigned integer
expressions
minST.cpp:103: warning: comparison between signed and unsigned integer
expressions
minST.cpp:93: warning: unused variable `SEXPREC*vlist'
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c ordering.cpp -o ordering.o
ordering.cpp: In function `SEXPREC* BGL_king_ordering(SEXPREC*, SEXPREC*,
SEXPREC*, SEXPREC*)':
ordering.cpp:172: warning: unused variable `int delta'
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c shortestPath.cpp -o shortestPath.o
shortestPath.cpp: In function `SEXPREC*
BGL_bellman_ford_shortest_paths(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*,
SEXPREC*)':
shortestPath.cpp:79: warning: unused variable `int j'
shortestPath.cpp: In function `SEXPREC*
BGL_floyd_warshall_all_pairs_shortest_paths_D(SEXPREC*, SEXPREC*, SEXPREC*,
SEXPREC*)':
shortestPath.cpp:180: warning: unused variable `const int V'
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c sna.cpp -o sna.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c transitive_closure.cpp -o transitive_closure.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -IboostIncl -fpic -g -O2 -Wall -c wavefront.cpp -o wavefront.o
g++ -shared -L/usr/local/lib64 -o RBGL.so bbc.o cliques.o clusteringCoef.o hcs.o incrConnComp.o interfaces.o layout.o mincut.o minST.o ordering.o shortestPath.o sna.o transitive_closure.o wavefront.o
** R
** data
** inst
** save image
Loading required package: graph
** help
>>> Building/Updating help pages for package 'RBGL'
Formats: text html latex example
FileDep text html latex example
RBGL.overview text html latex
astarSearch text html latex example
bandwidth text html latex example
bccluster text html latex example
bellman.ford.sp text html latex example
betweenness text html latex example
bfs text html latex example
biConnComp text html latex example
clusteringCoef text html latex example
clusteringCoefAppr text html latex example
coloring text html latex example
connectedComp text html latex example
dag.sp text html latex example
dijkstra.sp text html latex example
edgeConn text html latex example
extractPath text html latex example
floyd.warshall.all.pairs.sp text html latex example
gprofile text html latex example
graphGenerator text html latex example
highlyConnSG text html latex example
incrConnComp text html latex example
is.triangulated text html latex example
isomorphism text html latex example
johnson.all.pairs.sp text html latex example
kCliques text html latex example
kCores text html latex example
lambdaSets text html latex example
layout text html latex example
maxClique text html latex example
maxFlow text html latex example
minCut text html latex example
mstree.kruskal text html latex example
ordering text html latex example
prim.minST text html latex example
separates text html latex example
sp.between text html latex example
strongComp text html latex example
transClosure text html latex example
transitivity text html latex example
tsort text html latex example
wavefront text html latex example
** building package indices ...
* DONE (RBGL)
* creating vignettes ... OK
* cleaning src
* running cleanup
removing exploded boost header source...
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'RBGL_1.10.0.tar.gz'