Package: pairseqsim

Version: 1.8.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD build pairseqsim

RetCode: 0

Time: 59.9 seconds

Status: OK

PackageFile: pairseqsim_1.8.0.tar.gz

* checking for file 'pairseqsim/DESCRIPTION' ... OK
* preparing 'pairseqsim':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'pairseqsim' ...
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -Wall -c align.c -o align.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -Wall -c basic.c -o basic.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -Wall -c callalign.c -o callalign.o
gcc -G -L/usr/local/lib -o pairseqsim.so align.o basic.o callalign.o   
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'pairseqsim'
     Formats: text html latex example 
  AAAlignment-class                 text    html    latex   example
  AAAlphabet-class                  text    html    latex   example
  AASequence-class                  text    html    latex   example
  AASequence                        text    html    latex   example
  AASequenceList-class              text    html    latex   example
  EPAM110                           text    html    latex   example
  Submatrix-class                   text    html    latex
  listdist-methods                  text    html    latex
  readFasta-methods                 text    html    latex   example
  salign-methods                    text    html    latex   example
  sequlist                          text    html    latex   example
  testalign-methods                 text    html    latex
** building package indices ...
* DONE (pairseqsim)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'pairseqsim_1.8.0.tar.gz'