Package: stam

Version: 1.6.0

Command: D:\biocbld\bbs-1.9\R\bin\R.exe CMD check stam_1.6.0.tar.gz

RetCode: 0

Time: 939.1 seconds

Status: OK

CheckDir: stam.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-1.9/meat/stam.Rcheck'
* using R version 2.4.1 (2006-12-18)
* checking for file 'stam/DESCRIPTION' ... OK
* this is package 'stam' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'stam' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating stam-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating stam-manual.tex ... OK
* checking stam-manual.tex ... OK

installing R.css in D:/biocbld/bbs-1.9/meat/stam.Rcheck


---------- Making package stam ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making util.d from util.c
gcc   -Id:/biocbld/bbs-1.9/R/include  -Wall -O2 -std=gnu99   -c util.c -o util.o
windres --include-dir d:/biocbld/bbs-1.9/R/include  -i stam_res.rc -o stam_res.o
gcc  -shared -s  -o stam.dll stam.def util.o stam_res.o  -Ld:/biocbld/bbs-1.9/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: GO
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: pamr
Loading required package: cluster
Loading required package: annaffy
Loading required package: KEGG
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'stam'
     Formats: text html latex example chm 
  golubTrain.cv                     text    html    latex           chm
  golubTrain.fit                    text    html    latex           chm
  image.stamPrediction              text    html    latex           chm
  plot.stamCV                       text    html    latex           chm
  plot.stamFit                      text    html    latex           chm
  plot.stamPrediction               text    html    latex           chm
  stam-internal                     text    html    latex           chm
  stam.cv                           text    html    latex   example chm
  stam.evaluate                     text    html    latex   example chm
  stam.fit                          text    html    latex   example chm
  stam.graph.plot                   text    html    latex           chm
  stam.net                          text    html    latex   example chm
  stam.predict                      text    html    latex   example chm
  stam.rgb.colors                   text    html    latex   example chm
  stam.serve                        text    html    latex   example chm
  stam.writeHTML                    text    html    latex   example chm
  stamCV-class                      text    html    latex           chm
  stamEval-class                    text    html    latex           chm
  stamFit-class                     text    html    latex           chm
  stamINode-class                   text    html    latex           chm
  stamLeaf-class                    text    html    latex           chm
  stamNet-class                     text    html    latex           chm
  stamNode-class                    text    html    latex           chm
  stamPrediction-class              text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-1.9\meat\stam.Rcheck\00_pkg_src\stam\chm\stam.chm


Compile time: 0 minutes, 0 seconds
25	Topics
128	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-1.9\meat\stam.Rcheck\00_pkg_src\stam\chm\stam.chm, 54,369 bytes
Compression decreased file by 68,330 bytes.
  adding MD5 sums

* DONE (stam)