installing R.css in D:/biocbld/bbs-1.9/meat/affxparser.instdir
Using auto-selected zip options ' affxparser-HELP=ziponly'
---------- Making package affxparser ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making R_affx_bpmap_parser.d from R_affx_bpmap_parser.cpp
making R_affx_cdf_extras.d from R_affx_cdf_extras.cpp
making R_affx_cdf_parser.d from R_affx_cdf_parser.cpp
making R_affx_cel_parser.d from R_affx_cel_parser.cpp
making R_affx_test_bpmap_cmdline.d from R_affx_test_bpmap_cmdline.cpp
making R_affx_test_cdfwriter_cmdline.d from R_affx_test_cdfwriter_cmdline.cpp
making R_affx_test_celwriter_cmdline.d from R_affx_test_celwriter_cmdline.cpp
making R_affx_test_cmd_line.d from R_affx_test_cmd_line.cpp
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFData.cpp -o fusion_sdk/calvin_files/data/src/CDFData.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::DataSetHeader::DataSetHeader(const affymetrix_calvin_io::DataSetHeader&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void affymetrix_calvin_io::CDFProbeSetInformation::SetDataGroup(affymetrix_calvin_io::DataGroup&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CELData.cpp -o fusion_sdk/calvin_files/data/src/CELData.o
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetIntensities(int32_t, int32_t, FloatVector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:427: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp:431: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetStdev(int32_t, int32_t, FloatVector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:445: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetNumPixels(int32_t, int32_t, Int16Vector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:459: warning: comparison between signed and unsigned integer expressions
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/DataGroup.cpp -o fusion_sdk/calvin_files/data/src/DataGroup.o
fusion_sdk/calvin_files/data/src/DataGroup.h: In constructor `affymetrix_calvin_io::DataGroup::DataGroup(const std::string&, const affymetrix_calvin_io::DataGroupHeader&, void*, bool)':
fusion_sdk/calvin_files/data/src/DataGroup.h:101: warning: `affymetrix_calvin_io::DataGroup::fileStream' will be initialized after
fusion_sdk/calvin_files/data/src/DataGroup.h:97: warning: `bool affymetrix_calvin_io::DataGroup::useMemoryMapping'
fusion_sdk/calvin_files/data/src/DataGroup.cpp:35: warning: when initialized here
fusion_sdk/calvin_files/data/src/DataGroup.h: In constructor `affymetrix_calvin_io::DataGroup::DataGroup(const std::string&, const affymetrix_calvin_io::DataGroupHeader&, std::ifstream&, bool)':
fusion_sdk/calvin_files/data/src/DataGroup.h:101: warning: `affymetrix_calvin_io::DataGroup::fileStream' will be initialized after
fusion_sdk/calvin_files/data/src/DataGroup.h:97: warning: `bool affymetrix_calvin_io::DataGroup::useMemoryMapping'
fusion_sdk/calvin_files/data/src/DataGroup.cpp:43: warning: when initialized here
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >, _ForwardIterator = affymetrix_calvin_io::DataSetHeader*]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp -o fusion_sdk/calvin_files/data/src/DataGroupHeader.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::DataSetHeader::DataSetHeader(const affymetrix_calvin_io::DataSetHeader&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::ColumnInfo, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/DataSet.cpp -o fusion_sdk/calvin_files/data/src/DataSet.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::ColumnInfo, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = std::string, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = std::wstring, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/DataSetHeader.cpp -o fusion_sdk/calvin_files/data/src/DataSetHeader.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/FileHeader.cpp -o fusion_sdk/calvin_files/data/src/FileHeader.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >, _ForwardIterator = affymetrix_calvin_io::GenericDataHeader*]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::GenericDataHeader, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::DataGroupHeader::DataGroupHeader(const affymetrix_calvin_io::DataGroupHeader&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::ColumnInfo, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::DataSetHeader, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/GenericData.cpp -o fusion_sdk/calvin_files/data/src/GenericData.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp -o fusion_sdk/calvin_files/data/src/GenericDataHeader.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::GenericDataHeader, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::GenericDataHeader::GenericDataHeader(const affymetrix_calvin_io::GenericDataHeader&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp -o fusion_sdk/calvin_files/exception/src/ExceptionBase.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `virtual void affymetrix_fusion_io::CalvinCELDataAdapter::GetParameters(affymetrix_fusion_io::FusionTagValuePairTypeList&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp:21:
fusion_sdk/file/BPMAPFileData.h:29: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp: In member function `char affymetrix_fusion_io::FusionCDFProbeInformation::GetPBase() const':
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:420: warning: converting to non-pointer type `char' from NULL
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp: In member function `char affymetrix_fusion_io::FusionCDFProbeInformation::GetTBase() const':
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:433: warning: converting to non-pointer type `char' from NULL
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp:21:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCELData.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `virtual void affymetrix_fusion_io::GCOSCELDataAdapter::GetParameters(affymetrix_fusion_io::FusionTagValuePairTypeList&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp -o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:25: warning: ignoring #pragma warning
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h: In constructor `affymetrix_calvin_parameter::ParameterNameValueType::ParameterNameValueType(const std::wstring&, const void*, int32_t, const std::wstring&)':
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:345: warning: `affymetrix_calvin_parameter::ParameterNameValueType::Value' will be initialized after
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:342: warning: `std::wstring affymetrix_calvin_parameter::ParameterNameValueType::Type'
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:130: warning: when initialized here
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h: In constructor `affymetrix_calvin_parameter::ParameterNameValueType::ParameterNameValueType(const std::wstring&, const affymetrix_calvin_parameter::MIMEValue&, const std::wstring&)':
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:345: warning: `affymetrix_calvin_parameter::ParameterNameValueType::Value' will be initialized after
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:342: warning: `std::wstring affymetrix_calvin_parameter::ParameterNameValueType::Type'
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:138: warning: when initialized here
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp: In member function `std::wstring affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType::DefaultToString()':
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:444: warning: enumeration value `UnknownType' not handled in switch
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp: In member function `std::wstring affymetrix_calvin_parameter::ParameterNameValueType::ToString() const':
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:399: warning: enumeration value `UnknownType' not handled in switch
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType::operator=(const affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CelFileReader.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp: In member function `void affymetrix_calvin_io::DataGroupHeaderReader::ReadNextDataGroupFilePos(std::ifstream&, affymetrix_calvin_io::DataGroupHeader&)':
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:122: warning: unused variable 'z'
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp: In member function `void affymetrix_calvin_io::DataGroupHeaderReader::ReadFirstDataSetFilePos(std::ifstream&, affymetrix_calvin_io::DataGroupHeader&)':
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:133: warning: unused variable 'z'
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp: In member function `u_int32_t affymetrix_calvin_io::DataGroupHeaderReader::ReadDataSetCnt(std::ifstream&, affymetrix_calvin_io::DataGroupHeader&)':
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:144: warning: unused variable 'z'
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp: In member function `void affymetrix_calvin_io::DataGroupHeaderReader::ReadDataGroupName(std::ifstream&, affymetrix_calvin_io::DataGroupHeader&)':
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:155: warning: unused variable 'z'
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp: In member function `void affymetrix_calvin_io::DataSetHeaderReader::ReadParameters(std::ifstream&, affymetrix_calvin_io::DataSetHeader&)':
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:160: warning: deleting `const void*' is undefined
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetReader.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/FileInput.cpp -o fusion_sdk/calvin_files/parsers/src/FileInput.o
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:27: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp: In member function `void affymetrix_calvin_io::GenericDataHeaderReader::Read(affymetrix_calvin_io::GenericDataHeader&)':
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:63: warning: deleting `const void*' is undefined
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp -o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:29: warning: ignoring #pragma warning
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp: In function `void InitializeRandomNumberGenerator()':
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:50: warning: cast from pointer to integer of different size
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/DateTime.cpp -o fusion_sdk/calvin_files/utils/src/DateTime.o
fusion_sdk/calvin_files/utils/src/DateTime.cpp: In static member function `static affymetrix_calvin_utilities::DateTime affymetrix_calvin_utilities::DateTime::Parse(std::wstring)':
fusion_sdk/calvin_files/utils/src/DateTime.cpp:160: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/utils/src/DateTime.cpp:172: warning: comparison between signed and unsigned integer expressions
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/FileUtils.cpp -o fusion_sdk/calvin_files/utils/src/FileUtils.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In static member function `static std::list > affymetrix_calvin_utilities::FileUtils::ListFiles(const char*, const char*)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/StringUtils.cpp -o fusion_sdk/calvin_files/utils/src/StringUtils.o
fusion_sdk/calvin_files/utils/src/StringUtils.cpp:27: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/checksum.cpp -o fusion_sdk/calvin_files/utils/src/checksum.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/file/BPMAPFileData.cpp -o fusion_sdk/file/BPMAPFileData.o
In file included from fusion_sdk/file/BPMAPFileData.cpp:20:
fusion_sdk/file/BPMAPFileData.h:29: warning: ignoring #pragma warning
fusion_sdk/file/BPMAPFileData.cpp: In member function `bool affxbpmap::CBPMAPFileData::ReadDataSection()':
fusion_sdk/file/BPMAPFileData.cpp:369: warning: unused variable 'probeIn'
fusion_sdk/file/BPMAPFileData.cpp:370: warning: unused variable 'probeOut'
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affxbpmap::CGDACSequenceItem::CGDACSequenceItem(const affxbpmap::CGDACSequenceItem&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = TagValuePairType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = TagValuePairType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affxbpmap::GDACSequenceHitItemType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = affxbpmap::CGDACSequenceItem, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/file/BPMAPFileWriter.cpp -o fusion_sdk/file/BPMAPFileWriter.o
In file included from fusion_sdk/file/BPMAPFileWriter.h:26,
from fusion_sdk/file/BPMAPFileWriter.cpp:20:
fusion_sdk/file/BPMAPFileData.h:29: warning: ignoring #pragma warning
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In function `int tokenize(const std::string&, std::list >&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affxbpmapwriter::CGDACSequenceItemWriter::CGDACSequenceItemWriter(const affxbpmapwriter::CGDACSequenceItemWriter&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `bool affxbpmapwriter::CGDACSequenceItemWriter::processHitItem(std::list >&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = TagValuePairType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `bool affxbpmapwriter::CBPMAPFileWriter::ReadTpmap()':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/file/CDFFileData.cpp -o fusion_sdk/file/CDFFileData.o
In file included from fusion_sdk/file/CDFFileData.cpp:28:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = std::string, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = affxcdf::CCDFQCProbeSetInformation, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affxcdf::CCDFProbeGroupInformation, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::__uninitialized_fill_n_aux(_ForwardIterator, _Size, const _Tp&, __false_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >, _Size = unsigned int, _Tp = affxcdf::CCDFProbeSetInformation]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::__uninitialized_fill_n_aux(_ForwardIterator, _Size, const _Tp&, __false_type) [with _ForwardIterator = affxcdf::CCDFProbeSetInformation*, _Size = unsigned int, _Tp = affxcdf::CCDFProbeSetInformation]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = affxcdf::CCDFProbeSetInformation, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = affxcdf::CCDFProbeGroupInformation, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/file/CELFileData.cpp -o fusion_sdk/file/CELFileData.o
fusion_sdk/file/CELFileData.cpp:33: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/file/FileIO.cpp -o fusion_sdk/file/FileIO.o
fusion_sdk/file/FileIO.cpp:31: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c fusion_sdk/file/FileWriter.cpp -o fusion_sdk/file/FileWriter.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c R_affx_cel_parser.cpp -o R_affx_cel_parser.o
In file included from D:/biocbld/bbs-1.9/R/include/R.h:49,
from R_affx_cel_parser.cpp:10:
D:/biocbld/bbs-1.9/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/windows.h:52,
from fusion_sdk/calvin_files/data/src/DataSet.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from R_affx_cel_parser.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c R_affx_cdf_parser.cpp -o R_affx_cdf_parser.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_parser.cpp:1:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning
In file included from D:/biocbld/bbs-1.9/R/include/R.h:49,
from R_affx_cdf_parser.cpp:9:
D:/biocbld/bbs-1.9/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/windows.h:52,
from fusion_sdk/file/CDFFileData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_parser.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c R_affx_cdf_extras.cpp -o R_affx_cdf_extras.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_extras.cpp:1:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning
In file included from D:/biocbld/bbs-1.9/R/include/R.h:49,
from R_affx_cdf_extras.cpp:9:
D:/biocbld/bbs-1.9/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/windows.h:52,
from fusion_sdk/file/CDFFileData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_extras.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -ID:/biocbld/bbs-1.9/R/include -Wall -O2 -c R_affx_bpmap_parser.cpp -o R_affx_bpmap_parser.o
In file included from R_affx_bpmap_parser.cpp:1:
fusion_sdk/file/BPMAPFileData.h:29: warning: ignoring #pragma warning
In file included from D:/biocbld/bbs-1.9/R/include/R.h:49,
from R_affx_bpmap_parser.cpp:12:
D:/biocbld/bbs-1.9/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/windows.h:52,
from fusion_sdk/file/BPMAPFileData.h:30,
from R_affx_bpmap_parser.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
R_affx_bpmap_parser.cpp: In function `SEXPREC* R_affx_get_bpmap_file(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
R_affx_bpmap_parser.cpp:368: warning: 'pmx' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:368: warning: 'pmy' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:368: warning: 'mmx' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:368: warning: 'mmy' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:368: warning: 'probeseq' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:368: warning: 'strand' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:368: warning: 'probelength' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:369: warning: 'matchscore' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:369: warning: 'startpos' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:369: warning: 'centerpos' might be used uninitialized in this function
windres --include-dir D:/biocbld/bbs-1.9/R/include -i affxparser_res.rc -o affxparser_res.o
g++ -shared -s -o affxparser.dll affxparser.def fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o affxparser_res.o -LD:/biocbld/bbs-1.9/R/bin -lws2_32 -lR
... DLL made
installing DLL
installing R files
save image
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'affxparser'
Formats: text html latex example chm
1._Dictionary text html latex chm
2._Cell_coordinates_and_cell_indi text html latex chm
9._Advanced_-_Cell-index_maps_for text html latex chm
affxparser-package text html latex chm
applyCdfGroups text html latex example chm
cdfAddBaseMmCounts text html latex chm
cdfAddProbeOffsets text html latex chm
cdfGetFields text html latex chm
cdfGetGroups text html latex chm
cdfGtypeCelToPQ text html latex chm
cdfHeaderToCelHeader text html latex chm
cdfMergeAlleles text html latex chm
cdfMergeStrands text html latex chm
cdfMergeToQuartets text html latex chm
cdfOrderBy text html latex chm
cdfOrderColumnsBy text html latex chm
compareCdfs text html latex chm
convertCdf text html latex example chm
copyCel text html latex chm
createCel text html latex example chm
findCdf text html latex example chm
findFiles text html latex chm
invertMap text html latex example chm
isCelFile text html latex chm
readBpmap text html latex example chm
readCdf text html latex chm
readCdfCellIndices text html latex chm
readCdfGroupNames text html latex chm
readCdfHeader text html latex example chm
readCdfIsPm text html latex chm
readCdfNbrOfCellsPerUnitGroup text html latex example chm
readCdfQc text html latex chm
readCdfUnitNames text html latex example chm
readCdfUnits text html latex example chm
readCdfUnitsWriteMap text html latex example chm
readCel text html latex example chm
readCelHeader text html latex example chm
readCelIntensities text html latex example chm
readCelRectangle text html latex example chm
readCelUnits text html latex example chm
updateCel text html latex example chm
updateCelUnits text html latex example chm
writeCdf text html latex chm
writeCelHeader text html latex chm
writeTpmap text html latex example chm
zipping help files
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-1.9\meat\R.INSTALL\affxparser\chm\affxparser.chm
Compile time: 0 minutes, 0 seconds
46 Topics
171 Local links
46 Internet links
1 Graphic
Created d:\biocbld\bbs-1.9\meat\R.INSTALL\affxparser\chm\affxparser.chm, 85,419 bytes
Compression decreased file by 121,836 bytes.
preparing package affxparser for lazy loading
adding MD5 sums
packaged installation of package 'affxparser' as affxparser_1.6.2.zip
* DONE (affxparser)